Triplophysa dalaica: 130427219
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Entry
130427219 CDS
T09616
Symbol
ddx3xa
Name
(RefSeq) DEAD-box helicase 3 X-linked a isoform X1
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
tdw
Triplophysa dalaica
Pathway
tdw04622
RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
tdw00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
130427219 (ddx3xa)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tdw03019
]
130427219 (ddx3xa)
03041 Spliceosome [BR:
tdw03041
]
130427219 (ddx3xa)
03036 Chromosome and associated proteins [BR:
tdw03036
]
130427219 (ddx3xa)
Enzymes [BR:
tdw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
130427219 (ddx3xa)
Messenger RNA biogenesis [BR:
tdw03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
130427219 (ddx3xa)
mRNA cycle factors
Common to processing body (P body) and stress granule
130427219 (ddx3xa)
Spliceosome [BR:
tdw03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
130427219 (ddx3xa)
Chromosome and associated proteins [BR:
tdw03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
130427219 (ddx3xa)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
Motif
Other DBs
NCBI-GeneID:
130427219
NCBI-ProteinID:
XP_056610453
LinkDB
All DBs
Position
8:16833457..16849129
Genome browser
AA seq
714 aa
AA seq
DB search
MSHVVVDGSHGLDQQELAVLDLNSADGQGAGIGRRYIPPHLRNKDAPKSDSPGWDGGRSN
GFINGYHDGRMNITANFVRGPPRSDRGGRGGYRGNRNGGSFNQPMHNAGYGGYENKDGGW
NAMVNRDAYTSFAGRSDRGKSAFFNDRGTGSRGRYERGGFAGGTGGNSRWVDESRDEEDW
SKQLPPNERLENELFAGSNTGINFEKYDDIPVEATGTDSPVHIDSFHDVDMGEIIMSNIA
LSRYTRPTPVQKYAIPIIKSKRDLMACAQTGSGKTAAFLLPVLSQIYTEGPGEALQATKA
STQQENGKYVRRKQYPISLILAPTRELALQIYDEARKFAYRSKVRPCVVYGGADIGQQIR
ELERGCHLLVATPGRLVDMMERGKIGLDHCNYLVLDEADRMLDMGFEPQIRRIVEQDTMP
TKGARQTMMFSATFPKEIQILARDFLEEYIFLAVGRVGSTSENITQKVVWVEENDKRSFL
LDLLNATGKDSLTLVFVETKKGADALEDFLYHEGYACTSIHGDRSQRDREEALSQFRSGR
CPIMVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFYNDKNSN
ITKDLLDILVEAKQEVPSWLENLAYEHQHKSTSRGRPKRFSGGFGARDYRQMAGGGNTFG
NRGARNTVGHGGNRGFGGNKVSNLGGFGSFGNDTFGGNYANYGGNYAQVDWWGN
NT seq
2145 nt
NT seq
+upstream
nt +downstream
nt
atgagtcatgtggtcgtcgacggttcacacggtctagatcagcaggagcttgctgtttta
gacttgaactcggctgatgggcagggtgcaggcattggtcggcgttacattcctccacat
ttgagaaacaaagatgcaccaaaaagtgattctccagggtgggatggcggtcgcagcaat
ggtttcatcaatgggtaccacgacggtcgtatgaatattactgcaaactttgtacgtgga
cctcctcgcagtgacagagggggacgtggcggctacagaggcaacaggaacggtggttcc
ttcaaccagccaatgcataatgcaggttatggcggttacgagaacaaagatggaggctgg
aatgctatggtgaacagagatgcctacacaagctttgccggacgttctgacagaggaaag
tctgcatttttcaatgacagaggaaccggatcaagaggaaggtatgagcgtggagggttt
gcagggggaacaggagggaacagccgttgggttgatgagtccagagatgaagaggactgg
tcaaagcaattgccccccaatgagcgtctggaaaatgagctgttcgctgggagcaacacc
gggattaactttgagaagtatgacgacattcctgtggaagccactggaacggactcccct
gtgcatatcgatagctttcatgatgtggatatgggggagatcattatgagcaacatcgcc
ttgagccggtacacgcgccctactcctgttcagaagtatgcaatccctatcatcaaaagc
aagagggacctgatggcctgcgcacagacaggctctgggaaaactgcagccttcctgctt
cctgtgctgagtcagatctacactgaaggaccaggagaagcactgcaggccaccaaagcc
agcacccagcaggagaatggaaagtatgtccggcgcaaacagtatcccatttctttgatt
ttggctccaacaagagagcttgcccttcagatttatgatgaggccagaaagtttgcctac
cgctccaaagtgcgaccttgtgtagtttatggaggtgctgatataggccagcagattcgt
gaattggaaagaggttgtcatctgcttgtggccacaccgggccgtctggtagacatgatg
gagcggggaaagattggcctggaccactgcaattatctggtccttgatgaggcagacaga
atgcttgatatgggttttgaacctcagatcagacgtattgtggagcaagacaccatgccc
actaaaggagctcgccagaccatgatgttcagtgccaccttccccaaggagatccagatt
ctggcccgtgactttctggaggagtacatctttctggctgttgggcgtgtgggttccacc
tccgagaacatcacccagaaggtggtctgggtggaagagaatgacaagcgctccttcctc
ctcgacctgctcaatgctacagggaaggattctctcacgctggtgtttgtggaaaccaaa
aagggagcagatgcgctagaagacttcctgtaccacgagggctatgcttgcaccagtatc
catggcgaccgctctcagcgcgatcgcgaggaagcgctcagccagttccgttctggacgc
tgtcctataatggttgccactgctgtggctgcacgagggcttgacatatccaatgtgaaa
catgtgatcaactttgacctgccaagtgatattgaggaatatgtccaccgcattgggcgt
acaggccgcgtgggaaaccttggtttggccacatcgttctacaatgataagaacagcaac
atcactaaagatttgctggacattctggtggaggccaaacaagaggttccttcctggctc
gagaacctggcttacgagcaccagcacaagagcaccagccgtggacgccccaagaggttc
tctggaggctttggagccagagattaccggcagatggctgggggtggtaacacttttggt
aaccgtggtgctcgcaacaccgttggccatggagggaaccgcggttttggaggcaacaag
gtgtctaatttaggtggctttgggagttttggcaatgacacctttggcgggaactacgct
aactacggaggaaactacgcccaggttgactggtggggcaactaa
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