Triplophysa dalaica: 130427341
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Entry
130427341 CDS
T09616
Symbol
col18a1a
Name
(RefSeq) collagen type XVIII alpha 1 chain a isoform X1
KO
K06823
collagen type XVIII alpha
Organism
tdw
Triplophysa dalaica
Brite
KEGG Orthology (KO) [BR:
tdw00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
tdw04147
]
130427341 (col18a1a)
00535 Proteoglycans [BR:
tdw00535
]
130427341 (col18a1a)
00536 Glycosaminoglycan binding proteins [BR:
tdw00536
]
130427341 (col18a1a)
Exosome [BR:
tdw04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
130427341 (col18a1a)
Proteoglycans [BR:
tdw00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
130427341 (col18a1a)
Glycosaminoglycan binding proteins [BR:
tdw00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
130427341 (col18a1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Endostatin
Collagen
Fz
Collagen_trimer
DUF1554
Motif
Other DBs
NCBI-GeneID:
130427341
NCBI-ProteinID:
XP_056610709
LinkDB
All DBs
Position
8:20340911..20410987
Genome browser
AA seq
1631 aa
AA seq
DB search
MTLNVMFELRMWSCLVVLMCLRIQDSHGWFWFDEGAQTLGNLTTVRPTSPPSTEAPRTAG
SSASGTEVLKVGEKLGRYMGYGDHFEGSTGEGGSGFGSKAEADSLSGSGSSQFESQESFV
TATNLSGIAVEGTNVHAGKFEPESNSSQVDLMDGHNTSFVDNRFNESVSLKNMSRNLFGD
YFTGYDNNNTTQYSLEYSVSDHLLTNESDRSQTPRCLPVDSKLPFCSRMGTKSIAVPNFL
NQSSVEEVHVVLTEWAWLLQSRCHHSLEWFFCLLLTPRCAPPGLTPPLPCRSFCEILRDS
CWTLLDQGRLPVECHSLPEEKHDGYQCLSVSNQKEESGVSLLQLIGDPPPDGITETNGPD
NSLGYVFGPSSNVGQSAAAHLPNPFHRDFSLIFNIKPTSTKPGVIFSITDPSQNFMYVGV
KLSGVQNGKQDIIFYYTEPDSQSSYEAARFSVPSMQNTWTRFSISVLKDKVSLYFKCDSD
PQVLNFERSPDDMDLDAGAGVFVGHASGSDPDKFLGVIGDLRVLKDPGAAERHCEEDEDD
YDATSGDGPSGYGESEPPVQPTPPSSRPIQQPPVTIKLPDTRKQQTGEKGDRGEKGVKGD
RGSVGQKGDSGSASASGGSAKGEKGDVGEKGTKGNSGFGYPGIKGDRGTPGSPGPPGPPG
PSAEVEVRGDGSVVERVTGPRGPPGPPGPSGPAGTDGEPGDPGEDGKTGPVGPTGFPGTP
GNSGPKGDKGDRGEGQPGPRGPPGPPGPPSRSDRPTFDDMEGSGFDMDVMRGLPGLPGPQ
GPAGPPGPPGNTSSGSGGFGPPGPPGQNGAPGQPGLPGVAGADGKSGSPGSRGEKGDAGE
LGLPGPVGVKGAQGTPGLPGLPGETGLAGLPGPMGPVGPSGPPGPPGPSYHVGFDDMEGS
AIQFGSMPGVRGPAGIQGPPGLPGLPGKPGLPGPPGGKGSEGPQGRDGRPGLDGFPGPQG
QRGDKGDRGDRGEPGRDGTGLPGPPGPPGQIVYHAENYNGDRTGPQGGLGVPGQAGFPGP
IGPKGDRGEPGAPGYAIKGEKGEPGLIVGPDGNPSYLGGLTGSQGERGIPGPVGPSGPAG
PQGPKGEFGMPGRPGRPGVNGYKGEKGEAGSGSGNGYQGPPGPPGPPGPPGPPVPLERYS
RYEDSGRTFTAPKGDKGDPGAAGIPGSPGFGTNFDIYTLKEEMKGELGEPGLKGEKGEPG
GGFYDPRLGGVQGPPGSPGLPGPKGDSIRGPPGPQGPSGPPGVGYDGRPGTPGPPGPPGP
PGTPSLPGPYRPSLSIPGPPGPAGPPGSPGHGSGVNVLRSYDLMLATARRHTEGALIYIL
DRSDLYVRVQNGVRQVMLGDYKPFYGDLDNEVAAVQPPPVVQYSQDHTSNNGAEQISPPQ
NPIELPRESENRNPSTPDSSYPDQRYPPQPDHRYPPHTDSRYNSGQLPIRFPVTPARRPN
PPVNQPEGHTHTSGPGLHIIALNSPQVGNMRGIRGADFMCFQQARAVGLTGTFRAFLSSK
LQDLYSIVRKSDRETLPIVNLKDQVLFNNWESLFSDSESRMKENASIYSFDGRDVLRDSA
WPEKMVWHGSNGKGHRQMDNYCETWRAGDHAVTGLSSNLQSGQLLQQTPTSCSGSYIVLC
IENSYMSQSKK
NT seq
4896 nt
NT seq
+upstream
nt +downstream
nt
atgactttgaacgtgatgtttgagctcaggatgtggtcctgccttgttgtactgatgtgc
ctgaggattcaggattcgcatggatggttttggtttgatgagggtgcacagacactgggc
aacctgactaccgtaaggcctacatcaccaccgagcacggaagcgcccagaacagcaggt
tcaagtgcttctgggactgaggtcctcaaagtgggtgagaaattaggtaggtatatggga
tatggagatcattttgaggggtctactggggagggtggctctggatttgggtccaaagct
gaggcagactctttaagtggatctggatcttctcagtttgaaagccaggagagctttgtt
actgcgaccaatctgtctggcattgctgttgaaggtactaatgtgcatgctggaaagttt
gaaccggagagcaattctagccaagtggacctgatggatggacacaacaccagcttcgtt
gacaaccgatttaatgaaagtgtttctttgaaaaacatgagccgtaatttatttggtgat
tattttacagggtatgataataataacacaactcagtattctcttgaatactctgtctca
gatcatttactaaccaatgaaagtgaccgctctcaaaccccacgctgcttgccggttgat
tccaaattgccattttgctccagaatgggaacaaaaagtatcgccgtgcctaattttcta
aatcaaagcagcgtggaggaagtacatgtggtcttgaccgaatgggcgtggctcttacag
tcacgctgccatcatagcttggaatggtttttctgcctgctgttgacgccgcggtgcgcc
ccacccggactgacgccaccactgccctgtcgcagtttctgcgaaatcctgcgagacagc
tgctggacactgctggaccagggacgcctccccgtggagtgccattctctgcctgaagag
aagcatgatgggtatcagtgcttgtcagttagtaaccagaaagaagaaagtggagtatct
ctgttgcagttaatcggtgatcctccaccagatggcatcactgaaaccaatggccccgat
aacagcctcggctacgtgttcgggccgagctccaacgtgggccagtcagctgccgcccac
cttcccaaccctttccaccgtgacttctcgctcatcttcaacatcaaacccacatccacc
aagccaggtgtcatcttttccatcactgacccctctcagaatttcatgtatgtgggtgtg
aagctgtcgggggttcagaacggcaagcaggacatcatcttctactacaccgagccggat
tcacaaagctcatacgaggcggccaggttctccgtaccgtccatgcagaacacctggacg
cgcttttccatcagtgttctcaaagataaggtgtccctgtacttcaagtgtgactctgat
cctcaagtcctcaactttgagcgttccccagacgatatggacttggacgctggtgccgga
gtgtttgttggtcacgccagtggatcagaccctgataaattcctgggtgtaatcggtgat
ctgagggtgttgaaagaccctggggctgctgagcgtcactgcgaggaagatgaggatgac
tatgatgcgacatcaggtgacggaccgagtggctatggagaaagcgaaccaccagtccag
cccacacctccctcctcacgaccaatccagcagccaccggtgaccattaaactgccagac
actagaaagcagcagacgggagaaaagggcgacagaggagagaagggggtcaaaggtgac
cgtggctctgtcgggcagaagggcgattcgggatctgcctctgcgtctggtggaagtgct
aaaggagaaaagggtgatgtaggagagaaaggaactaagggcaattctggttttggctat
cctggaataaagggagaccgtggcacccctgggtctccaggtcctcctggtcctccagga
cccagtgctgaggtagaggtaaggggcgatgggtcagtagtggagagggtgactggaccg
agaggaccacctgggccacctggaccctcaggacctgctggaactgatggagagccaggt
gaccctggtgaagatggtaagacgggccctgttggacccaccggttttccaggtactcca
gggaattcaggacctaaaggagacaaaggcgaccgaggtgaaggccaacctggaccccgt
gggcctccaggacctcctggacccccatctcgctctgacagacctacattcgatgacatg
gagggttctggttttgatatggatgttatgcggggactcccaggtttgccaggcccacaa
ggtcctgccggtccgcctggacctcctggcaacacgtcttcagggtctggtggtttcggg
cctcctggaccaccggggcaaaatggggctccaggtcaaccgggacttccaggtgttgca
ggtgctgatgggaaatcaggctcacctggatcaagaggagagaagggtgatgccggtgag
ctgggtttgcctggacctgtgggagtgaagggtgctcaaggtactcctggtctccctggt
ctaccaggagagactggacttgctgggcttcctggaccaatgggacctgttggaccatcc
gggccacctggtcctcccggcccaagctatcatgttggttttgatgatatggaaggctct
gctattcaattcggttcaatgcctggagtaagaggacctgcagggatacagggacctcct
ggtttgccaggactgccaggtaagcctggtttaccaggacctcctggtgggaaaggcagc
gaaggacctcagggaagagatggacgtcctgggttggatggcttccctggaccacaggga
caaaggggagacaaaggtgacagaggcgatagaggtgaacctggtcgggatggcactggt
cttccgggtccacctggtccccctggccagattgtctatcacgctgaaaattataatgga
gacaggacaggacctcagggtgggcttggtgttccaggtcaagctggattcccaggtcca
atcggacccaaaggtgacagaggtgaacctggagcaccaggttatgccattaagggcgag
aaaggagaacctggacttattgtcggacctgacggaaacccatcttacctaggtggattg
acaggctcgcagggtgagagagggatccctggaccagttggaccttccgggccagctgga
cctcaaggcccaaaaggtgaatttggaatgccaggcagacccggacgtccaggtgtgaac
ggttataaaggtgaaaagggagaagcagggtcaggttctggaaatggctaccagggtccc
cctggtcccccaggaccccctggcccccccggccctcctgtgcccttggaaagatacagc
agatatgaagattcggggagaacttttacagctcctaaaggagacaaaggagaccctggt
gccgctggcatacctggatcccctggttttggaactaattttgatatctacacgcttaag
gaggagatgaagggagaacttggtgagcctggtcttaaaggagagaaaggagaaccaggc
ggtggattttacgatcctcgtttaggaggtgtacagggacccccaggaagccctggtctt
cctggacctaaaggagactccatcagaggtccacctggaccgcagggcccttctggacca
cctggagttggttatgatggtcgtccaggaacaccaggacccccaggacctcccggtcct
ccagggacaccatcattgccagggccctatagaccatcactcagtattcccgggccccca
ggtccagcaggacctcctggaagccccggtcatggatcaggggtgaatgtgcttaggtct
tatgacttgatgctcgccacagcacgcagacacacagaaggagctcttatatatattttg
gacagaagtgacctctacgtcagagttcaaaatggagtcagacaagttatgcttggagat
tataaacccttctatggagatctggacaatgaggtagcagctgtccagccacctcctgtt
gtccagtattcccaggaccacacgtccaacaacggagcagaacagatttctccaccgcaa
aatcccatcgagttgccaagggagtctgaaaacaggaaccccagcacgcctgactccagc
tacccagatcaacgatacccccctcagcccgatcatagatacccaccccacacagacagc
agatacaactctggccaattaccaatcagattccctgtgacccctgctcgccgtcccaac
ccccctgtcaatcaaccggaaggccacacgcacacatctgggccagggttgcatattatt
gccctcaactctccacaagtgggcaacatgagaggcattcgtggggcagacttcatgtgc
ttccagcaggctcgggccgtggggctgacaggaacgttcagagcattcctttcttccaaa
ctccaggacctctacagcatcgtgcgcaaatctgaccgagagacactaccaattgttaac
ctcaaggatcaagtgctgttcaataactgggagtctctcttcagtgattcagagagccgg
atgaaggaaaatgcttccatttactcgtttgatggtagagatgtcttgagagacagtgcc
tggccagagaagatggtctggcacgggtccaatggtaagggtcaccggcagatggataac
tactgtgagacgtggagggctggggaccacgcggtgacaggcctgtcctcgaatctgcag
tcgggtcaactcctccagcagacccccaccagctgttccgggtcttacatcgtgctgtgt
atcgagaacagctacatgtcacagtccaagaaataa
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integrated database retrieval system
