Triplophysa dalaica: 130427723
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Entry
130427723 CDS
T09616
Symbol
upf3a
Name
(RefSeq) regulator of nonsense transcripts 3A isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
tdw
Triplophysa dalaica
Pathway
tdw03013
Nucleocytoplasmic transport
tdw03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tdw00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
130427723 (upf3a)
03015 mRNA surveillance pathway
130427723 (upf3a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tdw03019
]
130427723 (upf3a)
Messenger RNA biogenesis [BR:
tdw03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
130427723 (upf3a)
mRNA cycle factors
P-body specific factors
130427723 (upf3a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_1
Motif
Other DBs
NCBI-GeneID:
130427723
NCBI-ProteinID:
XP_056611335
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All DBs
Position
8:complement(17569478..17574981)
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AA seq
481 aa
AA seq
DB search
MRAEKEQRTGSRERGSVEIQFGECQREHDNVAVNPKHKEEKKEIFSKVVIRRLPPSLSKD
QLEEHLSPLPSFDYFEFFPADQSLYPHLFSRAYINFKNQEDIIIFRDRFDGYVFIDNKGQ
EYPAVIEFAPFQKVSKKKLKKKDAKAGTIEEDPEYRRFLENYSCDEEKSVANPETLLGEI
EAKTRELIAKRTTPLLEYIKNKKLEKQRIREEKREERRRRELEKKRQREEEKRKRREEER
RKRKEADKQKKLSEKEIKIKLLKKCDRDDDVDSDRLKDKGDSGETEKNRWEKPLGHTKSK
DSKDPKGQIENDKEQRESHGRRQRDKEHRGRDEDRKRQRHHYEFDKFMRRKEETKWGKGY
CQDRAKKDQHHGYSFCPETGDKLGKDDREDMGNRKERIRNKSVLVHQEKRTSQSEGPDQI
GGALPAKDRPAMQLYQPGARNRKRIGSGNKTFDFPPISPEHEGEPCYKTVIGTGSEKSAD
E
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atgagggctgaaaaggagcagagaacaggaagcagggagagaggcagcgtcgaaatccag
ttcggggagtgtcagagggagcatgacaacgtcgcggtgaacccgaagcacaaggaggaa
aagaaggagatctttagcaaggttgtcatacgcagactgccccccagtctatcaaaagac
cagctcgaggagcatctgagtcctcttccatcttttgactattttgagttcttccctgcc
gatcagagcctttacccacatctcttctcaagagcatacatcaacttcaaaaaccaagag
gatattattattttcagagatcggtttgatggctatgtattcattgacaataaaggccaa
gagtatccggctgttatagaattcgcaccatttcagaaagtttctaaaaagaagttaaag
aagaaagatgctaaagcaggaaccattgaagaagacccagaatacagacgatttctggaa
aactactcttgcgatgaggagaagtcagtggccaacccagaaacactactgggagagatt
gaagctaaaactcgagaacttatagccaaaaggacaacaccattactggaatacattaaa
aacaagaagttagagaaacagaggatcagagaggaaaaaagagaggagcgacggaggaga
gaactggaaaagaagcgtcagagggaggaagagaagagaaagcgcagagaggaggagaga
cgaaagcgcaaggaggccgacaagcagaaaaagctctcagagaaagagataaaaatcaag
cttctgaagaagtgtgaccgagatgatgatgtggactcagatagactgaaagataaagga
gacagcggagagacggaaaagaacagatgggaaaagccgctgggacacactaagtcaaag
gattctaaggatcctaagggtcaaatcgagaatgacaaggagcagcgggagagccatggc
cgtcgccagagggacaaagagcatcgtggcagagacgaggatcgtaaacggcaaaggcat
cactacgagtttgataagttcatgcgacgcaaggaggagaccaaatggggtaaaggctac
tgccaggacagggccaagaaagaccaacatcacggctattccttctgcccagagacgggc
gacaaactcggtaaagatgacagagaagacatgggcaacagaaaagaacgcattcgtaac
aagtctgtgttagtgcatcaggagaaaaggacttcccaatctgaggggccagaccagata
ggaggggctctgccagcaaaggaccgcccggcaatgcagctttaccaacctggtgcccga
aaccgcaagcgcataggctccggaaacaagacctttgactttccgcccatttcacctgaa
catgaaggagaaccctgctacaaaacggtcataggaacaggctcggaaaaaagtgcagat
gagtga
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