Triplophysa dalaica: 130427788
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Entry
130427788 CDS
T09616
Symbol
ddx18
Name
(RefSeq) ATP-dependent RNA helicase DDX18
KO
K13179
ATP-dependent RNA helicase DDX18/HAS1 [EC:
5.6.2.7
]
Organism
tdw
Triplophysa dalaica
Brite
KEGG Orthology (KO) [BR:
tdw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tdw03041
]
130427788 (ddx18)
03009 Ribosome biogenesis [BR:
tdw03009
]
130427788 (ddx18)
Enzymes [BR:
tdw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
130427788 (ddx18)
Spliceosome [BR:
tdw03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
130427788 (ddx18)
Ribosome biogenesis [BR:
tdw03009
]
Eukaryotic type
90S particles
Helicases
130427788 (ddx18)
Pre-60S particles
130427788 (ddx18)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
CTE_SPB4
ResIII
AAA_22
Motif
Other DBs
NCBI-GeneID:
130427788
NCBI-ProteinID:
XP_056611437
LinkDB
All DBs
Position
8:19046332..19050649
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AA seq
654 aa
AA seq
DB search
MADMQMRIIRKKLDKRAQKNKQRKLLQKQQQEDNEVNVDLEESDVISESTLTTTENQQQS
FSAEENEPSHNIKKKKKKRKLDGTIDSTSSLKKVKKQKAGEHTTEASEVRENEQIVEISE
EGEVPEKLPENGNEEKEDSEEEDEDGPELPLGLTGAFEDKSFASLAEVVSENTLRGVEEM
GFETMTEIQHKTIRPLLEGRDILAAAKTGSGKTLAFLIPAIELIYKLKFMPRNGTGVIIL
SPTRELAMQTYGVMKELMAHHVHTYGLIMGGSNRSAEAQKLANGVNILVATPGRLLDHLQ
NTPGFMFKNLQCLIIDEADRILEVGFEEELKQIIKLLPKKRLTMLFSATQTRKVEDLARI
SLKKEPLYVGVDDNKDTATVEGLEQGYVVCPSEKRFLLLFTFLKKNRKKKIMVFFSSCMS
VKYHYELLNYIDLPVMGIHGKQKQTKRTTTFFQFCNADSGILLCTDVAARGLDIPEVDWI
VQFDPPDDPKEYIHRVGRTARGINGRGHALLILRPEELGFLRFLKQAKVPLSEFEFSWSK
ISDIQSQLEKLIEKNYFLHKSAQEGYKAYVRAYDSHSLKQIYNVETLELPKVALSFGFIV
PPYVDLNVHSSRGAKMMKRGGGGGFGYQKSKNVHKAKIFKHISKGRGESRQFSR
NT seq
1965 nt
NT seq
+upstream
nt +downstream
nt
atggcggacatgcagatgagaattatccgtaagaaactcgacaaaagagcacagaaaaat
aaacaacgcaaactgctacaaaaacaacaacaagaagacaacgaggtaaatgttgatctg
gaggaatctgatgtgatcagtgaatctacactgacaaccactgaaaaccagcagcagagt
ttctccgcggaggagaatgaaccctcacacaacatcaagaagaagaaaaagaaaagaaaa
ctggatgggacaatagattcaacatccagtttaaaaaaggtaaaaaagcagaaggcaggt
gaacataccaccgaagcatcagaagtcagagaaaatgaacagattgtggaaatatcagag
gaaggtgaagtgcctgagaagctgccagaaaatggaaatgaagaaaaggaggattccgaa
gaggaggatgaagacggaccagagcttcctttagggctgacaggtgcatttgaggacaaa
tcatttgcatctttggcggaggtcgtaagcgagaatacactaaggggagtggaagaaatg
ggctttgagaccatgacagagatccagcacaagaccatacgccctctgctggaaggacga
gacattttggcagctgctaaaacaggaagtggtaaaacactggctttcctgattcctgct
attgagctcatctacaaactcaaattcatgcccaggaatggaactggagtgattattctg
tctcctacacgtgagttggccatgcagacgtatggagtgatgaaggagttgatggctcat
cacgtgcacacttacggcctcatcatgggaggcagcaatcgctctgccgaagcccagaaa
ctcgctaatggggtcaatattctggttgccacacctgggagacttcttgatcacctgcag
aacacacctggcttcatgtttaagaatcttcagtgtctgatcatcgatgaggcagatagg
attctggaggtgggctttgaggaggagctcaaacagatcatcaaactgctgccgaaaaaa
aggctgacgatgttgttttcagcaacacagacacgtaaggtggaagaccttgcacgaatc
tcccttaaaaaggagccgttgtatgtgggggtggatgacaacaaagacacagccactgtg
gaaggactagaacagggttatgtcgtatgtccttcagagaaacgctttttgctactcttc
acatttctgaagaagaaccggaagaagaagatcatggtgttcttctcatcctgcatgtct
gtaaagtatcattatgagctgctgaattacatcgacctgcctgtcatgggcattcacggc
aagcagaaacagaccaagagaacaaccacgtttttccagttctgtaacgcagactctggc
attcttctctgtactgatgtcgctgccagaggtctggacatcccagaggtggattggatc
gttcagtttgacccacctgatgatcccaaggagtacatacatcgtgtggggagaacagca
cgtggaattaacggcagaggacacgccctcctcatcctgagaccagaagagctcggcttt
ttgagattcctcaagcaagcaaaagttcctctgagtgagtttgagttctcctggagtaaa
atctctgatattcagtcacagctggagaagctgattgagaagaactatttcctccataaa
tcagctcaggagggatacaaggcctatgtcagagcctatgactcacattccctcaaacag
atctataatgtagaaaccctcgagctccccaaggtggccttgtcctttgggtttatagtg
ccaccctatgtagacctcaacgttcacagcagtagaggagcgaagatgatgaaaagagga
ggtggaggaggtttcggctaccagaaatctaagaatgtccacaaggccaagatcttcaaa
catatcagcaaggggagaggagaaagcaggcagttctcacgctga
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