Triplophysa dalaica: 130427801
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Entry
130427801 CDS
T09616
Symbol
prpf40a
Name
(RefSeq) pre-mRNA-processing factor 40 homolog A
KO
K12821
pre-mRNA-processing factor 40
Organism
tdw
Triplophysa dalaica
Pathway
tdw03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tdw00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
130427801 (prpf40a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tdw03041
]
130427801 (prpf40a)
Spliceosome [BR:
tdw03041
]
Complex A
U1 snRNP components
U1 related factors
130427801 (prpf40a)
Complex B
130427801 (prpf40a)
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
FF_RHG35_4th
Motif
Other DBs
NCBI-GeneID:
130427801
NCBI-ProteinID:
XP_056611455
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All DBs
Position
8:complement(2938736..2956540)
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AA seq
846 aa
AA seq
DB search
MMGPPGIPPHFPPMGMPPMGQRPPSMAPLPPGIMPPMMPPMGQMPAMLPPMMPGMMMPPR
LPAASVQPTGPPGVSPVESAAPAAPGTVSTTSTDSSPEELQRKRSLWTEHKSLDGKTYYY
NTESKQSTWEKPDDLKSPAEQMLSKCPWKEYKSDTGKPYYYNSQTKESRWTKPKELEDLE
AMIKAEENGTADVVAPGTTPAVTSQSESTVAMVAVAETETTMTTSTTEEQPSHVPAQDAE
VSSDVTVNSTEETPSVETQPSNDVSKEERPELVKKVYKWNTKEEAKQAFKELLKEKGVSS
NASWEQAMKLIINDPRYSALPKLSEKKQAFNAYKVQTEKEEKEEARIKYKESKETFQRFL
ENHEKMTSTTRYKKAEQMFNELEVWSCVPERDRLEIYEDVLFYLAKKEKEQAKQLRKRNW
EALKNILDNMANVTYRTTWSEAQQYLLDNPTFAEDEELQNMDKEDALICFEEHIRALEKE
EEDEKQKTLLRERRRQRKNRECFQKFLDELHEHGQLHSMSAWMEMYPTVSADIRFNNMLG
QPGSTPLDLFKFYVEDLKARYHDEKRIIKDILKDKGFLVEINTGFEDFGSVISSDKRATT
LDAGNIKLAFNSLLEKAEAREREREKEEARKMKRKEAAFKSMLKQATPPLEPEAAWEGVR
ERFLKEPAFEDITLESERKRIFKDFMHVLEHECQHHHSKTKKHSKKSKKHHRKRSRSRSG
SESEEEDYHSKKKKRSTSKSPSEHSSSGESERSYKKSKKHKKKGKKRRHKSASPESDGEK
ERKGREKEKDKENDKSRGKPRGESKQKSPKRKSAKEEGGWDTSGSELSEGELEKRRRTLL
EQLDAP
NT seq
2541 nt
NT seq
+upstream
nt +downstream
nt
atgatgggaccaccaggaatcccacctcacttccctccaatgggaatgccgcccatgggc
cagaggccacccagcatggcccctttgcctcctggaataatgcctcccatgatgccacca
atgggacagatgcctgccatgctgccaccaatgatgccaggaatgatgatgcccccccgt
ttgccagctgcatctgtacaacctacagggccgcctggtgtgagtccagtggaatctgca
gctccagctgctcctggaactgtaagcaccacctcaactgattcttcacctgaggaactg
caaagaaagaggtcattgtggaccgagcacaaatcactggatggaaaaacatattactac
aacacagagtccaaacagtccacctgggagaaacctgatgatctcaaatcacctgcagag
caaatgctgtccaagtgcccttggaaggagtataaatctgacactggaaagccctactac
tacaactcgcagaccaaagagtcccgctggactaaacccaaagaattggaggatctagaa
gcgatgataaaagcagaggagaatgggaccgctgacgttgtggctcctggcaccacacct
gctgtcacgtctcagagcgagtctactgttgccatggttgcggttgccgagactgagact
accatgacgacaagcaccacagaggagcaaccgtctcacgtgcctgcgcaggatgctgag
gtcagcagtgatgttactgtgaactccactgaggaaacgcccagcgtagagacacagccc
agtaatgacgtttctaaggaggagagacctgagctggtgaagaaagtttacaaatggaac
acaaaagaggaggcaaagcaggcctttaaagagctcctgaaagaaaagggagtttcctct
aatgcatcatgggaacaggcgatgaagctcataataaacgacccacgttacagtgctctt
cccaagctgagtgaaaagaaacaggcattcaacgcttataaagtccagacagagaaagag
gagaaagaagaagccagaatcaaatacaaagagtctaaagagaccttccagcgctttctt
gagaaccatgagaagatgacctcaactactagatacaaaaaagcggagcagatgtttaat
gagctggaggtgtggtcatgtgtcccagagagagacaggctggagatctatgaagatgtg
cttttttatcttgcaaagaaagagaaggaacaagccaagcagctgaggaagaggaactgg
gaggcacttaaaaacattttagacaacatggcaaacgtcacatacagaaccacctggtct
gaggctcaacagtacctgctggacaaccccacttttgctgaagatgaggaactacaaaac
atggataaggaagatgccttgatctgttttgaggaacacatccgtgctcttgagaaagag
gaggaagatgagaagcagaaaactcttctgcgagagagacgcagacaacgcaagaacaga
gaatgcttccagaaatttctggatgagcttcatgaacacgggcagctgcactccatgtct
gcctggatggagatgtacccgaccgtcagtgctgatatccgcttcaacaacatgttgggc
caaccaggctccacccctttggatttattcaaattttacgtggaggatctgaaagcccgc
taccatgatgagaagagaattatcaaagacatcctgaaggataaaggctttctggtggag
atcaacacaggcttcgaggatttcggctcagtgatcagctctgataaacgtgccaccaca
ctggatgcaggaaacatcaaactggccttcaatagcttactggagaaagcagaagcccgt
gagagggagagagagaaagaggaggcacggaagatgaagaggaaggaggcggcatttaag
agcatgctgaaacaggccacgccccctctggagccagaagccgcatgggagggagtaaga
gagcggttcctgaaagagcctgcgtttgaggatatcacgctggagtcggagaggaagagg
atattcaaagacttcatgcatgttctagagcacgagtgtcaacatcaccactctaaaact
aaaaaacactcaaagaaatccaagaaacaccacagaaaacgctcaagatctcgatcgggt
tcggagtcagaggaagaagattaccactccaagaagaagaaacgttcaacatctaaatct
ccatctgagcactcatcctctggagaatctgagagaagttacaagaaatctaagaagcac
aagaagaaaggaaagaaaagacgacacaaatcagcctctccagagtctgacggagaaaaa
gagcggaaggggcgagaaaaagagaaggataaagaaaacgacaagtctagagggaagccc
cgtggagaatccaaacagaaatctccaaaaagaaagagcgcaaaagaggagggaggatgg
gatacgtctggcagtgaactcagcgaaggagagctggagaagaggagacgcactctatta
gagcaactcgacgcaccataa
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