KEGG   Triplophysa dalaica: 130427981
Entry
130427981         CDS       T09616                                 
Symbol
pms1
Name
(RefSeq) PMS1 protein homolog 1
  KO
K10864  DNA mismatch repair protein PMS1
Organism
tdw  Triplophysa dalaica
Brite
KEGG Orthology (KO) [BR:tdw00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:tdw03400]
    130427981 (pms1)
DNA repair and recombination proteins [BR:tdw03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    MutL homologs
     130427981 (pms1)
SSDB
Motif
Pfam: DNA_mis_repair HMG_box HATPase_c_3 HMG_box_2 HMG_WDHD1 HATPase_c OAS1_C
Other DBs
NCBI-GeneID: 130427981
NCBI-ProteinID: XP_056611742
LinkDB
Position
8:complement(20008156..20031824)
AA seq 929 aa
MKALPAETVRLLCSSQVITSVLNVVKELIENSLDAGSSSLEVKLENYGLDRIEVRDNGSG
IKATDVPVMAVKHYTSKISCHEDLEHLETYGFRGEALASICAISEVIITTKTADDDFSIQ
HTVDHNGQVVSQKPSHLGEGTTVCASNLFKNLPVRRQYYSNTKKCKEELKRVQNLLMAYA
VVKPELRITLSHNKAVVWQKSRVSDHRAALMAVLGAACVANLLPVQHRQEQPEIDIDGFL
PKPGSDLNSTSSSSPDKTFIFVNSRPVHHKDILKLVKQYYTNSHSNNDSVSRRYPYLMIN
ITIPASTVDINLTPDKTQVMLQDKEEVMLAVEAMLISLYGSYSIGDDKLKTGENISEREQ
NQHRVCTDEEQPTTDISLMGPPEQPTTDISLMGPPEQPTTDISLMDPPKHLEHSSTNTSK
HEVSLNTTPNTSSSSSSDDWIINRRSSDFDSINSSSVDDVAMNSTTDLNCDSPKASKRDS
GPNLENDLSAESWSMGKCFSNQITGEDLEPVKLYLPNAEQDSREPTTIKKTSPSKTSSYS
IMEKMAKLTAFDLISNRSMRQPLSAFSLFEQDTRSQVLEENPKASLQDVTNAVKERWECL
GEEDRKKYESKAEKSLNYYNVQRKRATERGGQCAEGKKQMNASSSLNKAQGVKRKAPLAN
QQALDKLFSAQPPSKRSPAKLSKPLPFSIETLKRSLNLLSNQKSSGAQGLRLVNRLASHG
AWVVSCGRKLMLLNPFRVEEALLFKRLLKNNILPTARPQTPVQLTDGVLGGQEYMDILMN
MQKGSPCRNGGIYFTDPRLVANGFQIKLIPGSPSTERCLEVTGMADCMPFYGIGDLREIL
QAVKGRDAKTVEHCRPLKVSNYLEGEAVRLVRQLPLNLSRADVKNTLCRMKEELNAECQV
CLHGRPFYHDLLTVPETEEDALKIMSYSH
NT seq 2790 nt   +upstreamnt  +downstreamnt
atgaaggcacttccagcagagactgtgcgtttgttgtgcagctcacaggttataacatct
gtcctgaatgtcgtcaaggaacttattgaaaattcacttgatgctggttcctcaagcctt
gaagtcaaactggagaattatggattggatcgcattgaggtcagggacaatggttctggt
atcaaagctacagatgttcctgtgatggctgtaaaacactacacgtctaaaatctcatgt
catgaagacctggaacacctggagacatatggcttcagaggagaagcgctggcatccata
tgtgccatttcagaggttatcatcactaccaaaacagccgacgatgactttagcattcaa
catacagttgatcacaacggtcaagttgtttctcagaaaccatcgcatcttggcgagggc
accacagtgtgtgcctcaaatctgttcaagaaccttcccgtcagacggcaatattattcc
aacaccaagaaatgcaaagaggaactgaagagggtccagaacttactcatggcctacgct
gttgttaagcctgaattaaggatcaccttgagtcataataaggctgtggtctggcagaaa
tccagggtgtcggatcaccgagctgccctgatggctgtgctcggagcggcctgcgtagcc
aacttactccccgtccaacatcgccaggagcaaccagagattgacatcgatggcttcctt
cccaaaccaggctcggatttgaattctacaagctcttcaagcccagataaaacatttatc
tttgtaaatagtcgaccagtgcatcacaaagatatacttaagcttgtcaagcagtactac
accaacagtcactccaataatgactcagtaagccggcggtatccctatttgatgataaac
atcaccatacctgcatcgactgtggacatcaacttgacaccagacaaaacccaagtgatg
cttcaggataaggaagaagtgatgttggccgtggaggccatgttgatctccttgtatggg
tcttactccattggggatgacaaactcaaaacgggggaaaacatctccgagcgtgagcaa
aatcaacacagggtttgtaccgatgaggaacagcccaccacagatattagtttgatgggc
ccacctgaacagcccaccacagatattagtctgatgggcccacctgaacagcccaccaca
gatattagcttgatggacccaccaaaacatcttgaacattcttccacaaatacaagtaaa
catgaggtatctttgaacactaccccaaacaccagctcttcctcgtcttccgatgattgg
ataatcaacagaagatcaagtgattttgacagtatcaattcctcatctgttgatgacgtt
gcaatgaactcaacaacggatcttaactgtgactctccaaaggcttcaaagagagatagt
ggccctaatttagagaatgacctatctgctgagagttggagcatgggcaaatgcttctca
aatcaaatcacaggagaggacctagaacctgtgaaactctatctcccgaacgctgagcaa
gacagcagagagcctacaacgattaagaagaccagtccttccaagacatcatcttactcg
atcatggagaagatggccaagctgacagccttcgacctgatcagcaaccgctccatgcgt
cagcctctgtctgccttttcgctgtttgagcaagacaccagatcgcaagtcctcgaggag
aacccgaaggccagtcttcaggatgtcacaaatgctgtaaaagagcgatgggaatgcctg
ggggaggaagaccgaaagaagtatgaaagcaaggcggaaaaatctctgaactactacaac
gttcaaaggaagagggcaacagagagaggtggccagtgtgcagagggcaagaagcagatg
aacgccagctcttcgttgaacaaagctcaaggcgtgaagcgcaaggcccccctcgccaac
cagcaggccctggacaaacttttctccgcacagcccccgagcaagaggagccctgccaag
ctctccaaacccctcccgttcagtattgagaccctcaagcggagtcttaacctcctctcc
aaccagaagagctcgggcgcgcagggcctcaggcttgtaaaccgcttggcttctcacggt
gcctgggtcgtttcatgcggcagaaagctcatgttgttgaacccgtttcgagtggaggag
gccttgctgtttaaaagacttctgaagaataatatacttccaacagcgcgaccgcagacc
cccgtacagctgacagatggggtacttggtgggcaggagtacatggatatactcatgaac
atgcagaaaggcagtccctgtcgtaatggaggcatctactttactgatcctagacttgta
gcaaatggttttcaaatcaagctaattccaggttccccgtctactgagagatgtcttgaa
gtgacgggcatggctgactgcatgcctttctacgggataggagacctgagggagattctg
caggctgttaaaggccgggatgcaaaaactgtggagcactgcagacctcttaaagtgtca
aactacctagagggtgaggcggtaagactagtcagacagctacctctgaatctctccaga
gctgacgttaaaaacacactttgccgaatgaaagaggaacttaacgcagaatgtcaggtc
tgccttcacggacgaccattttatcatgatcttctcactgttcctgaaacagaagaggac
gctctcaagatcatgtcttattctcattaa

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