Triplophysa dalaica: 130427981
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Entry
130427981 CDS
T09616
Symbol
pms1
Name
(RefSeq) PMS1 protein homolog 1
KO
K10864
DNA mismatch repair protein PMS1
Organism
tdw
Triplophysa dalaica
Brite
KEGG Orthology (KO) [BR:
tdw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tdw03400
]
130427981 (pms1)
DNA repair and recombination proteins [BR:
tdw03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
MutL homologs
130427981 (pms1)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_mis_repair
HMG_box
HATPase_c_3
HMG_box_2
HMG_WDHD1
HATPase_c
OAS1_C
Motif
Other DBs
NCBI-GeneID:
130427981
NCBI-ProteinID:
XP_056611742
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Position
8:complement(20008156..20031824)
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AA seq
929 aa
AA seq
DB search
MKALPAETVRLLCSSQVITSVLNVVKELIENSLDAGSSSLEVKLENYGLDRIEVRDNGSG
IKATDVPVMAVKHYTSKISCHEDLEHLETYGFRGEALASICAISEVIITTKTADDDFSIQ
HTVDHNGQVVSQKPSHLGEGTTVCASNLFKNLPVRRQYYSNTKKCKEELKRVQNLLMAYA
VVKPELRITLSHNKAVVWQKSRVSDHRAALMAVLGAACVANLLPVQHRQEQPEIDIDGFL
PKPGSDLNSTSSSSPDKTFIFVNSRPVHHKDILKLVKQYYTNSHSNNDSVSRRYPYLMIN
ITIPASTVDINLTPDKTQVMLQDKEEVMLAVEAMLISLYGSYSIGDDKLKTGENISEREQ
NQHRVCTDEEQPTTDISLMGPPEQPTTDISLMGPPEQPTTDISLMDPPKHLEHSSTNTSK
HEVSLNTTPNTSSSSSSDDWIINRRSSDFDSINSSSVDDVAMNSTTDLNCDSPKASKRDS
GPNLENDLSAESWSMGKCFSNQITGEDLEPVKLYLPNAEQDSREPTTIKKTSPSKTSSYS
IMEKMAKLTAFDLISNRSMRQPLSAFSLFEQDTRSQVLEENPKASLQDVTNAVKERWECL
GEEDRKKYESKAEKSLNYYNVQRKRATERGGQCAEGKKQMNASSSLNKAQGVKRKAPLAN
QQALDKLFSAQPPSKRSPAKLSKPLPFSIETLKRSLNLLSNQKSSGAQGLRLVNRLASHG
AWVVSCGRKLMLLNPFRVEEALLFKRLLKNNILPTARPQTPVQLTDGVLGGQEYMDILMN
MQKGSPCRNGGIYFTDPRLVANGFQIKLIPGSPSTERCLEVTGMADCMPFYGIGDLREIL
QAVKGRDAKTVEHCRPLKVSNYLEGEAVRLVRQLPLNLSRADVKNTLCRMKEELNAECQV
CLHGRPFYHDLLTVPETEEDALKIMSYSH
NT seq
2790 nt
NT seq
+upstream
nt +downstream
nt
atgaaggcacttccagcagagactgtgcgtttgttgtgcagctcacaggttataacatct
gtcctgaatgtcgtcaaggaacttattgaaaattcacttgatgctggttcctcaagcctt
gaagtcaaactggagaattatggattggatcgcattgaggtcagggacaatggttctggt
atcaaagctacagatgttcctgtgatggctgtaaaacactacacgtctaaaatctcatgt
catgaagacctggaacacctggagacatatggcttcagaggagaagcgctggcatccata
tgtgccatttcagaggttatcatcactaccaaaacagccgacgatgactttagcattcaa
catacagttgatcacaacggtcaagttgtttctcagaaaccatcgcatcttggcgagggc
accacagtgtgtgcctcaaatctgttcaagaaccttcccgtcagacggcaatattattcc
aacaccaagaaatgcaaagaggaactgaagagggtccagaacttactcatggcctacgct
gttgttaagcctgaattaaggatcaccttgagtcataataaggctgtggtctggcagaaa
tccagggtgtcggatcaccgagctgccctgatggctgtgctcggagcggcctgcgtagcc
aacttactccccgtccaacatcgccaggagcaaccagagattgacatcgatggcttcctt
cccaaaccaggctcggatttgaattctacaagctcttcaagcccagataaaacatttatc
tttgtaaatagtcgaccagtgcatcacaaagatatacttaagcttgtcaagcagtactac
accaacagtcactccaataatgactcagtaagccggcggtatccctatttgatgataaac
atcaccatacctgcatcgactgtggacatcaacttgacaccagacaaaacccaagtgatg
cttcaggataaggaagaagtgatgttggccgtggaggccatgttgatctccttgtatggg
tcttactccattggggatgacaaactcaaaacgggggaaaacatctccgagcgtgagcaa
aatcaacacagggtttgtaccgatgaggaacagcccaccacagatattagtttgatgggc
ccacctgaacagcccaccacagatattagtctgatgggcccacctgaacagcccaccaca
gatattagcttgatggacccaccaaaacatcttgaacattcttccacaaatacaagtaaa
catgaggtatctttgaacactaccccaaacaccagctcttcctcgtcttccgatgattgg
ataatcaacagaagatcaagtgattttgacagtatcaattcctcatctgttgatgacgtt
gcaatgaactcaacaacggatcttaactgtgactctccaaaggcttcaaagagagatagt
ggccctaatttagagaatgacctatctgctgagagttggagcatgggcaaatgcttctca
aatcaaatcacaggagaggacctagaacctgtgaaactctatctcccgaacgctgagcaa
gacagcagagagcctacaacgattaagaagaccagtccttccaagacatcatcttactcg
atcatggagaagatggccaagctgacagccttcgacctgatcagcaaccgctccatgcgt
cagcctctgtctgccttttcgctgtttgagcaagacaccagatcgcaagtcctcgaggag
aacccgaaggccagtcttcaggatgtcacaaatgctgtaaaagagcgatgggaatgcctg
ggggaggaagaccgaaagaagtatgaaagcaaggcggaaaaatctctgaactactacaac
gttcaaaggaagagggcaacagagagaggtggccagtgtgcagagggcaagaagcagatg
aacgccagctcttcgttgaacaaagctcaaggcgtgaagcgcaaggcccccctcgccaac
cagcaggccctggacaaacttttctccgcacagcccccgagcaagaggagccctgccaag
ctctccaaacccctcccgttcagtattgagaccctcaagcggagtcttaacctcctctcc
aaccagaagagctcgggcgcgcagggcctcaggcttgtaaaccgcttggcttctcacggt
gcctgggtcgtttcatgcggcagaaagctcatgttgttgaacccgtttcgagtggaggag
gccttgctgtttaaaagacttctgaagaataatatacttccaacagcgcgaccgcagacc
cccgtacagctgacagatggggtacttggtgggcaggagtacatggatatactcatgaac
atgcagaaaggcagtccctgtcgtaatggaggcatctactttactgatcctagacttgta
gcaaatggttttcaaatcaagctaattccaggttccccgtctactgagagatgtcttgaa
gtgacgggcatggctgactgcatgcctttctacgggataggagacctgagggagattctg
caggctgttaaaggccgggatgcaaaaactgtggagcactgcagacctcttaaagtgtca
aactacctagagggtgaggcggtaagactagtcagacagctacctctgaatctctccaga
gctgacgttaaaaacacactttgccgaatgaaagaggaacttaacgcagaatgtcaggtc
tgccttcacggacgaccattttatcatgatcttctcactgttcctgaaacagaagaggac
gctctcaagatcatgtcttattctcattaa
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