Triplophysa dalaica: 130428400
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Entry
130428400 CDS
T09616
Symbol
arhgef12a
Name
(RefSeq) rho guanine nucleotide exchange factor 12 isoform X1
KO
K07532
Rho guanine nucleotide exchange factor 12
Organism
tdw
Triplophysa dalaica
Pathway
tdw04270
Vascular smooth muscle contraction
tdw04625
C-type lectin receptor signaling pathway
tdw04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
tdw00001
]
09140 Cellular Processes
09142 Cell motility
04810 Regulation of actin cytoskeleton
130428400 (arhgef12a)
09150 Organismal Systems
09151 Immune system
04625 C-type lectin receptor signaling pathway
130428400 (arhgef12a)
09153 Circulatory system
04270 Vascular smooth muscle contraction
130428400 (arhgef12a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tdw04131
]
130428400 (arhgef12a)
Membrane trafficking [BR:
tdw04131
]
Others
Rho GTPase associated proteins
Rho guanine nucleotide exchange factors (GEFs)
130428400 (arhgef12a)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RGS-like
PH_16
RhoGEF
PDZ
PDZ_6
PH_13
PDZ_2
SOS1_NGEF_PH
Pept_S41_N_bact
Motif
Other DBs
NCBI-GeneID:
130428400
NCBI-ProteinID:
XP_056612373
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All DBs
Position
9:12553012..12603111
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AA seq
1187 aa
AA seq
DB search
MSDTRSTLTDRSSSILSKDHPPDKRSKSDKLPGTPTHEFDPTDVLVQKSGFVVPDGRPES
CGLVQRCVIIQKDENGFGLTVSGDNPVFVQLVKQDGAAMRAGVQTGDRIVKVNGTLVTHS
NHVEVVKLIKSGSYVALTVLGRPPGLPQIPLPELDLCPGSPGGHGENFVTTPDSYSATER
TSALVSWEESSLPHNQRLDNKRILSKEQQDMQGLKDEHNKISKPLRDVQDAKKHIPHDGL
YLRNSEDGCWTDEDKGDLSPGSFWRGGSVAPVQRRFYPASPESQRDSDCSSPKSTPRDSL
NSCPSPDVDDVCDLDSRLQTSIRSPPSRQTSEIIVLEDEDFDTEQEQVNGQCSCFQDIEL
LKTRPAHLAVFLHHVISQFDPAPLLCYLYADLYKHTNSKEARRIFTDFLGFFIDRGAHLK
VAVPESISYELERRRLELIPEELHRQYIQTMQETLLPDVQRHLEDFRQKRNMGLTLAEAE
LARLDSEQPLVERERACAENILSKIDDVLVTSQPTEEEKCTTMQYVLYMYMKHLGLRVKE
QRILESKRPRMNFLPSKLRKSKIEKEGEEKLKKPRFPIRVPPRWPVRMESIAGGKAGESF
KQRPQKQMSQPAMGGSEQIEGGRLRGSQSSDGSDLLHSPGNITSPPFSSPYSSPSDPSGR
ETEFSMSPSAVVPRLSDGLQAGDVLDSIYPPCDYIPYSADPLDEDREGDRLLDAGTPKLI
RRFEELQSEDDQGSDVYSDVDPPNWQQLVGRDVLAGLTPHEIKRQEVINELFHTERAHVR
MLKVLDSVFYQKLTRDNILPPADIKNIFTNLEDIIQLHMRIADHMTAIRKKYESSVIDHI
GDELLSWFSGGEEEKIKNAVCTFCSNQPFALELIKSRQKKDQRFTTFMQEAESNRLCRRL
QLKDIIPAEMQRFTKYPLLMDNIAKNTDEVEEKDKVTRAAERCRKILNHVNQSVKESENK
QRLEDYQRRLDLSSLKQSENPMISEFKNLDLTKRKMVHEGPLSWKINKDKTIELYTLLLE
DILVLLQKQDERLILRCQSKNLAGTADTKHIFSPIIKLSTVLVRSVATDNRSFFVISMSE
NGAQIYELMAQTVSDQRMWQRQISHRADVMKAAKIHSVILLPQNDRDHDSVELSKFSKGS
DRISTGSVQSAEKDFPLRQPCGIVFLTLRKRTGYKELAGTAPIWSQN
NT seq
3564 nt
NT seq
+upstream
nt +downstream
nt
atgagcgacacacggtccacactcactgacagaagcagtagcatcctcagcaaagatcac
cctcctgacaagaggtccaaaagcgacaagctgcctggaacccctacacacgaatttgac
cctacagacgtgctggtgcagaagagtggatttgttgtgcctgacgggagacccgagtcc
tgtgggctggttcagagatgcgtcatcatacagaaagatgagaacggttttggactgacc
gtcagtggggacaaccctgtttttgtgcagctcgtcaaacaagatggagctgccatgcgt
gcaggtgttcaaactggggacagaatcgttaaggtgaacgggacattggtgacgcattca
aaccatgttgaagtggtgaagttaatcaaatccggctcttatgtggccctgacagtatta
ggtcgaccccccgggctgccccagatccccctccctgagctagacctatgtcccgggtca
ccagggggtcacggggagaactttgttacgacccctgactcttacagcgcaactgaacgc
acctccgctctggtgtcatgggaagagagcagccttccacacaaccaaagattggacaac
aagaggattttatccaaggagcaacaggacatgcagggactgaaggatgaacacaacaaa
atatccaaaccgctacgggacgtccaagacgctaagaagcacattccacatgatggtctg
tatctcaggaacagtgaagacggatgctggacggatgaggataaaggagacctcagccct
ggaagtttctggagaggaggttcagtggcgcctgtccaacggcggttctacccggcctct
ccggagagccagagagattccgactgctccagtccgaaaagcactcccagagacagcctc
aactcctgcccgtccccggatgtcgacgacgtatgtgacctggattctcgcctccagaca
tccattaggagcccaccctcccggcagacttcggagatcatcgttcttgaagatgaagac
tttgacacggagcaggaacaggtgaacggccagtgcagctgcttccaggacatcgagctg
ctcaagactcgcccagctcatctcgcggtgttcttacatcatgtgatctcacagtttgac
cctgctcctctgctctgctacctgtatgcggatctctacaagcacaccaactccaaagaa
gcacgtcggatcttcactgacttcttagggttcttcatagaccggggggcacatttgaag
gttgctgtgcctgaatccatctcctacgaactcgagaggagaaggctggagctgattcct
gaagaattgcacagacagtatatacagacaatgcaggaaactcttcttccagatgtccag
agacacctggaggacttcaggcagaaacgcaatatgggcttgacactggctgaggcggag
ctcgctcggctggactctgaacagccgcttgtggagagagagagagcatgtgccgagaac
atcctctcaaagatagatgatgtcctggtgacttcacagcccacagaagaggagaaatgc
acaacaatgcagtatgttttatacatgtacatgaagcatctgggactccgagtcaaagag
caacgaatcctggaatcgaagcgtccgcgaatgaattttcttccttccaagctgaggaaa
agcaaaatagagaaggagggagaggagaaactcaaaaaacctcgcttccccattcgggtg
cctccacggtggcctgttcgcatggaatcaatagcgggcgggaaggcaggagaaagcttc
aagcaaagacctcagaagcagatgtctcaaccagcgatgggcgggtcagagcaaatagaa
ggtggacgtctgcggggcagtcagtcgagcgatggctcagatctcctacatagccctgga
aacatcacctctccacccttcagcagcccttacagctcaccgtcagacccctctggaagg
gagacggagtttagcatgagcccatctgctgtggttccacggctaagtgacggccttcag
gctggagatgtgctggacagcatctacccaccctgtgactacatcccatatagcgccgac
ccactggatgaggacagagagggagacagactccttgatgcgggcacacccaaactgatt
agaaggtttgaggagctgcagagtgaagacgatcaggggagtgacgtttactctgatgta
gatcctccaaactggcagcagctggtggggcgtgatgttcttgcaggcctgacaccccac
gagatcaaacgacaagaagtcataaatgagctgttccacacagaacgagcacacgtgcgc
atgctgaaggtcctggatagcgtgttctaccaaaaactcacccgggacaacatactgccc
cctgctgacattaaaaacatattcaccaacctggaggacatcatccaattgcacatgagg
atagcggatcacatgactgcaatacgcaagaagtacgagtcatcggttattgaccacata
ggagatgagttactgtcttggtttagtggtggagaggaagagaagatcaagaatgcagtg
tgcactttttgcagtaaccagcctttcgcactggagctcatcaaatcccgacaaaagaag
gaccagcgtttcaccaccttcatgcaggaggctgaaagtaatcgactgtgccgaagactc
cagctgaaggacatcatccctgcggagatgcagaggttcacaaagtaccctttactgatg
gacaacattgccaagaacacagatgaggtggaggagaaagacaaagtgacacgagcggcc
gagagatgtcgaaagattctcaaccacgtcaaccagtccgtgaaggagtcggagaacaaa
cagagactggaagactaccagcgacgactggacctctcctcgctgaaacagagtgagaac
cccatgatctcagagtttaagaacttggatctcactaaaagaaaaatggtccacgagggt
cctctttcttggaaaatcaacaaagacaaaactattgagctgtatactttactcctggaa
gacatcctggtactgttgcagaagcaggacgagcgtcttattctcagatgtcagagtaag
aacctcgcgggtactgctgacaccaaacacatcttcagtcccatcatcaaactcagcact
gtgctggtgcgctctgtggcgacagacaacaggtcattcttcgtgatctccatgtctgaa
aacggagctcagatctatgagctgatggcccagacggtgtctgatcagagaatgtggcag
cgacagatcagtcatagggcagatgtcatgaaggccgccaaaatacacagcgtcattctg
ttacctcaaaacgatcgggaccatgacagtgttgaattgagcaagttcagcaaaggctcc
gaccgcatctccacgggaagcgttcagtcggcagagaaagattttccccttcggcagcct
tgcgggattgtgttcctgacacttcggaagaggaccgggtacaaagagctggccgggacg
gctcctatctggtctcagaactga
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