Triplophysa dalaica: 130428427
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Entry
130428427 CDS
T09616
Symbol
col4a3
Name
(RefSeq) collagen alpha-5(IV) chain
KO
K06237
collagen type IV alpha
Organism
tdw
Triplophysa dalaica
Pathway
tdw04510
Focal adhesion
tdw04512
ECM-receptor interaction
tdw04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
tdw00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
130428427 (col4a3)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
130428427 (col4a3)
09142 Cell motility
04820 Cytoskeleton in muscle cells
130428427 (col4a3)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
tdw04147
]
130428427 (col4a3)
00536 Glycosaminoglycan binding proteins [BR:
tdw00536
]
130428427 (col4a3)
Exosome [BR:
tdw04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
130428427 (col4a3)
Glycosaminoglycan binding proteins [BR:
tdw00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
130428427 (col4a3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
130428427
NCBI-ProteinID:
XP_056612439
LinkDB
All DBs
Position
9:18548138..18575383
Genome browser
AA seq
1671 aa
AA seq
DB search
MTVRVRRSNINMKMDSCSILRTTLVGLLLLGLLRPAMTDGGCSCSGKSRCDCHGIKGDAG
ASGFPGLEGVQGVIGHRGKEGPPGIPGPIGNMGFPGPPGIKGSRGIPGDAGYVGSPGLPG
LPGKEGPRGPPGLPGCNGTKGESGSPGMAGLKGCPGQQGKPGIQGPKGDTLYFPASQQVK
GLCGSPGKEGGKGKPGTLGLLGPVGPEGPIGSPGIQGIAGLQGEKGIEGRSIGKPGPRGQ
KGDRGLPGIPGDKGVKLFASGSKEPKGDQGDPGDPGCLGQCGPPGPPGPEGEKGETGDPG
CLGKNGLDGLEGKVGRPGVRGDPGNQGDIGIAGETGLKGDIGPTGLPGEFIVVNGNVKGP
KGFLGPTGRHGLRGSEGFLGFPGNPGPPGTAKPGPQGHPGPPGLRGVKGEQGEPAPYVSG
PKGYDGPPGERGPLGDPGLPGTKNVIANLGQGGLQGEKGLKGPEGFHGDPGEPGKRGDLC
MVCAISDADPGPPGPRGDSGQPGHPGVVGNQGFKGSQGDQGPEGQSGPQGSLGPQGLPGP
PGSNGDMGSVIETGEKGQKGNSGAAGPSGIHGRDGTPGNPGYKGPPGAKGNLGPPGPKGN
RGDPGLDGGPGIAGPTGIQGPVAVGQPGPSGEKGSLGVVGQPGNPGERGEKGSPGLVQST
PGDPGMPGRRGTPGLLGSQGNTGDNGFQGFPGLAGLKGVKGLSLPGACGPTGPKGDKGMK
GSSGPPCLGYTGRPGPPGLPGLPGTKGDTAFGSPGPMGRQGLPGEEGTLGDPGYCGSPGP
RGCPGQNGRDGPPGEHGAQGFDGLPGVEGLPGCCTAGYKGDEGPLGLLGEDGHTGLKGPK
GPQGETGQPGQGLPGPTGEVGIPGRNGETGFIGSQGQKGFKGRDGLPGVPGQRGLQGSPG
SSGPCGPDGNPGLPGPPGSKGLIGSNGVPGNIGKHGTPGDRGAVGPKGEPTSMVSPGDPG
DSGLPGTLGLPGSKGDLGIAGNYGASGKNGLQGDPGPPGPPGDPGRKGLPGNLGIDGSCG
NPGITGFPGLKGSKGSPGGRGEAGTPGCPGSDGPKGIKGEPSQPGFGLPGEPGEQGEPGG
PGNKGGKGDKGIFGNTGLRGLPGRPGEKGESGVSGDSGPPGPPGDNGLDGLPGAPGYRGP
SGSPGVPGPCGDPGAPGPRGDQGRDGIPGPVGTKGDRGPTVNGNPGPPGYMGEKGNKGDP
GPQGLCGSPGPCGPVGDLGPPGLPGDPGHRGCKGLAGICIPGPKGDRGPMGPPGRYGFKG
TRGPPGPPGPGMKGDKGVFGPLGHRGLPGCIGERGFLGTPGRDGRPGYRGVKGEMGPLGC
MGPHGQQGNCGPTGPPGSKGCRGSPGSKGPKGCDVVPEVIRIPGDPGLSGLVGEKGTQGI
VGPQGLHGPPGTQGSRGDTGLVGFPGRPGNPGPRGDFGPPGQEGAPGLSGEVGRKGAVGP
QGPMANVINDGFLFTKHSQKINVPPCPNGSRHLYDGYSLLFIHGNNRGHGQDLGTLGSCM
QRFSTMPFVVCNPDNTCRYASRNDYSYWLSTDKPISSDEPFISGDILEEYISRCAVCEAP
ANVIAVHSQTTEIPQCPEGWLSLWIGYSFVMETGAGAEGSGQSLVSPGSCLEEFRRIPFI
ECHGRGTCNFYPDSYSYWLASLDPDNMFSVPVRQTTPQPNIISRCRVCLKL
NT seq
5016 nt
NT seq
+upstream
nt +downstream
nt
atgactgttagagtgcgcaggtccaatatcaatatgaaaatggattcttgctcaatattg
cgaacgacacttgttggattgttgctgcttggacttcttagaccagcaatgactgatggg
ggctgttcttgcagcgggaaatcccggtgtgactgtcatggaattaaaggcgatgcgggt
gcatctggttttcctgggttggaaggtgtacaaggagttatagggcatcgaggaaaagaa
ggccctcctggaatccctggtccaataggaaatatgggatttccaggcccacccggaata
aaaggttctaggggaattccaggggatgcaggatacgttggctcaccaggccttcctggg
ctccctgggaaagaggggccaagggggcctccgggtctcccaggatgcaatggcacaaag
ggtgagtctggttccccaggcatggctgggttgaaggggtgtcctggtcaacagggaaaa
cctggcatccaaggacctaagggagatacgttatatttcccagcctctcagcaagtgaag
ggactttgtgggtctccaggcaaagaaggagggaaaggtaagcctgggacactgggatta
ctgggaccagttggaccagaaggccctataggttcaccaggaatacaggggattgcaggg
ttgcagggagagaagggtattgagggacgaagcattggaaaacctgggcccagaggtcag
aagggggacaggggtctgcctggcataccaggagacaaaggtgtcaagttatttgcatcg
ggatcaaaggagcctaagggtgaccagggtgatcctggagaccctggctgccttggacaa
tgtggtcctcctggccctcctggtcctgagggggagaaaggggaaacaggggatcccggc
tgcctgggtaaaaatggtttggatggactagagggcaaggtcggccgaccgggtgtgcgt
ggagatcctggaaatcaaggagatattgggatagctggggaaacgggtttgaagggtgac
atcggtcccactggtctccctggagagtttattgtagtaaatgggaatgttaaaggtcca
aaaggttttctcgggccaacaggacgtcatggcctcagaggaagtgaaggtttccttggc
tttccaggaaatccaggaccaccagggactgctaaacctggacctcaaggacatccaggt
cctccagggttaaggggtgtaaagggggaacaaggagaacccgcaccttacgtcagtgga
cctaaaggatatgatggaccaccaggagaacggggacccctcggtgaccctggacttccg
ggaaccaaaaatgtcattgccaatttgggacaaggagggcttcagggtgagaaaggcctt
aaaggccctgagggtttccatggagatcctggagaaccaggtaagagaggagatctgtgc
atggtgtgtgccatcagtgatgctgaccctggacctcctggaccacgtggagattctggt
caacctggacaccctggtgttgttgggaatcaaggttttaaaggatctcagggcgatcaa
ggccctgagggtcaatctggtcctcaaggttcattaggtcctcaaggcttaccagggccc
ccaggatccaatggagacatggggtcagtaattgagactggggagaagggccagaaagga
aactctggtgcagcaggaccatctgggatacatggaagagatggcacacctggaaaccct
ggctataaaggcccaccaggagccaaaggaaacctggggcctccaggaccgaaaggaaac
cgtggagacccaggacttgatggtggacctggtatcgcaggtccaacaggcatccaggga
cctgtggctgtgggccaacctggcccatctggagaaaaaggaagtttgggagtcgtgggc
caaccgggaaatccaggagaacgaggtgagaaaggatctccaggattggtacagtcaaca
cctggagacccgggaatgcctggacgccgtggtacacctggtctactaggatctcaaggt
aatactggtgacaacggatttcaaggattccctggactagccgggctaaaaggagtgaaa
gggctgtcattaccgggagcttgtggacctactggcccaaaaggtgataagggtatgaaa
gggagttcaggtccaccttgtttaggatacacaggccgacctggcccaccaggactccca
gggctgccaggcacaaagggtgatacagcattcggcagtccagggcccatgggtcggcag
gggctgccaggagaagaagggacccttggggatccaggatactgtggcagtcctggacca
cgtggatgtccaggtcaaaatggaagggatgggccaccaggagaacatggtgcccagggg
tttgatggcttgcctggagtggaaggtcttccaggatgctgtactgcggggtacaaaggt
gatgaaggccccttaggactgttaggagaagatggacacacagggctgaagggtcctaag
gggccacagggtgaaactggacaacctgggcaaggtttacctggtccgacaggtgaggtt
gggatacctgggagaaatggagagacaggttttattggtagccagggacagaaaggtttc
aaaggtcgagatggcttaccaggtgtcccaggtcaacggggacttcaggggagtcctgga
agctctgggccatgcggaccagatggaaatcctggacttcctggaccccctggatctaaa
ggtttaattggaagtaatggagtgccaggtaatataggaaaacatggaacaccaggagac
cgtggtgctgttggtccaaaaggagagccgacaagcatggtgtctccaggggatcctggt
gactctggcttaccaggtactcttggtctccctggttctaaaggcgacttgggaatcgca
ggcaactatggagcaagtggaaagaatggacttcagggtgatcctggtccaccaggtcct
cctggtgaccctggcagaaaggggcttcctggaaatctgggtattgatggcagctgtggg
aatccagggattactgggtttccgggcttgaaaggtagcaagggttcgccaggtggtcgt
ggggaggctgggactcctggttgtcctggatctgatggaccaaaggggatcaaaggtgaa
cccagccagcctgggttcgggcttccaggagaacctggtgagcagggtgagccgggtggt
ccagggaataaaggtggaaagggtgacaagggtatatttgggaatactggtctccgaggt
ttaccggggcgtcctggggaaaaaggcgaaagtggagtttcaggagattcaggacctcct
ggacctcctggtgataatggtttagatggtcttccgggtgcacctggatatcgagggcct
tctggttcaccaggtgttcctggtccgtgtggggatcctggagctccaggaccccgtgga
gatcaaggaagggatggtattcctgggccagttggaacaaaaggagatagaggccccact
gtcaatgggaatcctgggccacctggttacatgggtgagaaaggtaataaaggggatccc
ggacctcaaggattatgtgggtcaccaggaccctgtgggccggttggagatcttggtccc
cctggtctgcctggagatccggggcaccgtggatgtaaaggtttagctggaatctgcatt
cctggtccaaaaggggatagaggaccaatgggaccacctggtcgatacggtttcaaggga
acacgtgggccccccggtccacctggtccaggaatgaagggagataaaggggtctttggg
ccactgggccacagaggactgcctgggtgcattggtgagcgggggtttcttggaacacca
ggtagagatggacgtcctggctataggggtgtgaaaggagaaatggggcctttgggttgc
atggggccacatggtcaacaaggaaattgtggaccaactggccctcctgggtcaaaaggt
tgtagaggatctcctggatctaaaggtcctaaaggttgtgatgtggtgcctgaggtcatc
cgaattccaggagaccctggtttatctggcctagtcggtgagaaaggaacacaaggaata
gttggacctcaaggattacatggtcctccgggaacacaagggagtaggggagacacaggc
ctggttggttttcctggacggcctggaaaccctggcccgaggggagactttggtccacca
ggacaggaaggtgctcctgggttgtctggcgaagtgggacgcaaaggtgcggttggtccc
cagggaccaatggcaaacgtcataaacgatgggtttctttttaccaaacatagtcagaaa
attaatgtaccaccctgccccaatggatcgagacacctgtatgatggatattctcttctc
ttcatccacggcaataaccgtggacacgggcaagatttaggaacgctaggaagctgtatg
cagaggttttcaacaatgcctttcgtggtgtgtaatcctgacaacacctgccgctatgcc
tctcgaaatgattattcatattggctgtctacagacaaaccgatatccagcgacgaaccg
tttatctctggtgacatactggaagagtacataagcagatgtgcagtatgtgaagcacca
gctaatgttatagcagttcacagccagaccactgaaatcccacaatgccctgagggatgg
ctgtctctgtggataggttactcctttgtaatggaaacaggcgcaggtgcagaaggttcc
gggcagtcgctggtctctccaggttcgtgtctggaagagtttcggaggattccctttatc
gagtgtcatggtcgtggcacctgtaacttctacccggattcttacagctactggctggcg
tcgcttgaccccgacaatatgttcagtgtaccggtccgtcagacaacgccacaaccaaac
atcatcagccgttgtcgggtctgtctgaagctgtaa
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