Triplophysa dalaica: 130428664
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Entry
130428664 CDS
T09616
Symbol
scarf1
Name
(RefSeq) LOW QUALITY PROTEIN: scavenger receptor class F member 1
KO
K24318
scavenger receptor class F member 1
Organism
tdw
Triplophysa dalaica
Pathway
tdw04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
tdw00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
130428664 (scarf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tdw04131
]
130428664 (scarf1)
Membrane trafficking [BR:
tdw04131
]
Endocytosis
Phagocytosis
Scavenger receptors
130428664 (scarf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EGF_laminin
EGF_TEN
EGF_PEAR1L
Motif
Other DBs
NCBI-GeneID:
130428664
NCBI-ProteinID:
XP_056612823
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All DBs
Position
9:complement(15117693..15125781)
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AA seq
891 aa
AA seq
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MDIFLSLGLMLLCVQCSAQKLSPTRKNVCLNPRDSSPICCSGWSQQGDECTVPLCEGERA
CLQDEVCVYPGLCRCKPGFYGYQCKTTCPSEFWGPDCRERCPCHPHGLCDPVTGKCSCFP
SRWGNQCKNICKCWPHGKCDPVYGNCTCDEGWWTSTCSKACQCHAGTSTCDQATGRCQCN
ELYWGQKCSLRCNCYVSPCQQRTGECQCINGWWGPSCDRRCICDLSHADCLPSNGTCWCH
PGYKSPFCNEPCSEGKYGRGCEKSCGHCAGGRPCSKQDGLCDACEPGWNGTRCDQRCPEG
YYGHDCQEVCPQCRNKEPCNPETGVCLRCDPGWTGLRCNKPCTDGTYGDSCRFLCKTCYH
GHCDHVTGSCVCLPGFHGESCNNTCPVHQYGVNCTSVCDCGNLACHPSTGACPHSGREGL
LAGLLIPLLILVLALLFCCCCCGGPVDGKEGVAVGDGSPAVRMKHHVYTVLANMTSAMPC
ISMWSSGLPRVTVSHHDPELTFNHSFIEQPSSGWVIDSFETDDDGEAIYCEPPREDILTV
AGGELQELNSKCNFFLDPSNFSTEDMSQAFGIPRTSSIAKSKRPSVSFAEGTKFSPKERR
SSTQDLPGSVRKPKTWGVLMLSALQGGQGNHSEDDAKKAEEKNEENISSEEQAATTETPE
AGSERYSSGPLRTPVNVPSGRRRTLSTTKKNGHPQSSSDGGRETDSDAERLTTVYVTVGK
TPNMAKQSPXSEGPVQAMLRRLGSLQRQKEMAAQPKGRGQAIAKPPRRKLGARASAWEQT
TGSGNAEVVMRKPSRKKHLSSPCIVQTTDFPQDNSAPKRPLSSILKSVPESDVRRSLLEQ
DSQTDAPEEHEYETVAPSDGVSTSSEVLINETVVGQAEIEPSYENVYVKDS
NT seq
2676 nt
NT seq
+upstream
nt +downstream
nt
atggacatctttctctcattaggactgatgcttttgtgtgttcaatgctcagctcagaaa
ctctcaccaacgaggaagaatgtctgcttgaatcccagagactcttctcctatatgttgt
tctggatggagccagcagggtgatgaatgtacagtcccactctgtgagggagagagagct
tgtctacaggatgaagtgtgtgtttaccctggactctgccgatgcaaacctggattttat
gggtaccagtgcaagacgacatgcccttctgagttttgggggccagactgtcgggaacgc
tgtccttgccaccctcatgggctgtgcgacccagtaacaggcaagtgctcatgctttcct
agccgctggggcaaccagtgcaaaaacatctgcaaatgttggcctcatgggaaatgtgac
cccgtctacggcaactgcacctgtgacgagggatggtggacatcaacatgttccaaagcc
tgtcagtgccacgctggcacatccacctgtgaccaagccacaggccgctgtcagtgcaat
gagctctactggggccaaaagtgcagtttgaggtgcaattgctacgtgtctccttgccag
cagcgcactggggaatgtcagtgcatcaatggttggtggggtccgtcctgcgaccgccgc
tgcatctgtgatctaagccatgccgactgtctcccgtcgaatggcacctgttggtgtcac
ccgggttacaagagccctttttgcaacgaaccctgtagtgaaggaaaatatggacgagga
tgtgagaagagctgtggacactgtgcgggtggcaggccttgttctaaacaggatggcctg
tgtgatgcgtgtgaaccaggatggaatggcactcgctgtgaccaacgctgtccagaaggt
tattatggtcacgactgtcaggaggtttgcccacaatgcagaaacaaagagccatgtaac
ccggaaactggagtgtgcttacgctgtgaccctggctggactggactaagatgtaacaaa
ccctgcacagatggcacctacggagatagttgtcgattcctgtgtaaaacatgctatcac
ggccactgtgatcatgtgacaggaagttgcgtgtgtcttccgggcttccatggtgagagt
tgtaacaatacgtgccctgttcaccagtacggtgtcaactgcacttctgtgtgtgactgt
gggaatctcgcctgccatccaagcacaggggcttgcccacacagtggcagagaaggcctc
ttagccgggcttttgatccccctgcttatattagtacttgccttgttgttctgctgctgt
tgttgtggagggccagtcgacggaaaggaaggtgtggccgttggggatgggagtcctgca
gtccgcatgaagcatcatgtttacaccgtgctggccaacatgacttcagcaatgccttgt
atttccatgtggtcgtctggtctacctagagttacagtgtctcatcatgatcctgagctc
acctttaaccacagcttcattgaacagccatcatctggttgggtgattgattcgtttgaa
accgatgatgatggagaggctatctactgtgaaccccctagagaagatattctaactgtg
gccggtggggagctccaggagctgaattccaagtgtaacttcttccttgacccgtcaaac
ttcagcactgaggacatgtcacaagccttcggtatcccacgtacctccagcattgccaaa
tccaaacgtccttcagtctcctttgccgaaggcacaaagttcagccctaaggagcgccgc
agctccacccaggatctgcctggttctgtccgaaaacccaaaacttggggggtcctgatg
ctctcggccctccagggaggtcaaggaaaccacagtgaggacgacgcaaaaaaggcagaa
gagaaaaatgaagagaacatctcctctgaggagcaagcagctaccactgagacaccagaa
gcaggctcggaaagatacagctctggtcctttaagaactcctgttaatgttcccagtggg
aggcggcgaaccctttccaccacaaaaaaaaacggccaccctcaaagctcctctgacggg
ggacgagaaacagattcagatgcagagagactgacaactgtgtatgtgactgtaggcaag
accccaaatatggcaaaacagagtccangctcagaggggcccgtgcaggctatgctgcgc
agactgggcagtctccagagacagaaagagatggccgcccagcccaaaggcaggggacaa
gccattgccaagcctccgaggaggaagctgggagcacgggccagtgcgtgggagcaaacc
accgggtcaggcaatgcggaggtggtcatgaggaaacctagtcgcaagaagcacctcagc
tctccctgtatagtccagactacagattttcctcaggacaacagcgcccccaagaggccc
ctgtcctctattttaaaaagtgttccagagagtgatgtgcgtaggtctttgttggaacaa
gacagtcaaacagatgctccagaagaacatgaatatgagactgtggctccatcggatgga
gtctccacctcttctgaggttcttatcaatgagacagttgtgggtcaagcagaaattgaa
cctagttatgagaatgtttatgtaaaagattcataa
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