Triplophysa dalaica: 130428823
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Entry
130428823 CDS
T09616
Symbol
scaf4b
Name
(RefSeq) SR-related and CTD-associated factor 4b isoform X1
KO
K13167
SR-related and CTD-associated factor 4
Organism
tdw
Triplophysa dalaica
Brite
KEGG Orthology (KO) [BR:
tdw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tdw03021
]
130428823 (scaf4b)
03041 Spliceosome [BR:
tdw03041
]
130428823 (scaf4b)
Transcription machinery [BR:
tdw03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
130428823 (scaf4b)
Spliceosome [BR:
tdw03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
SR proteins
130428823 (scaf4b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
RRM_1
RRM_occluded
AAA_11
Motif
Other DBs
NCBI-GeneID:
130428823
NCBI-ProteinID:
XP_056613068
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Position
9:complement(21216122..21234665)
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AA seq
841 aa
AA seq
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MDMDAVNAFNEEMLSMMDMPPPISRAKMMSVTKAGIKAIKLYKHAVQIVEKFIKRCKPDL
KVAGLYVVDSIIRQSRHQFGADKDVFGPRFLKNFSVTFQNLYECPVDDKEKILRVLNLWQ
KNDVFGMDIIQPLLDMAAAPVLPVFENGTTVGVSLATPMSVPQLSSASASAVTLPSLQNP
VSPPTLPNPVAPPHLQNFIAPPSFQNPGALAAVAQLLQGTQGLEQLLQSLQQSGGAGLSQ
STAPPTEQKTSLAKSLLDRFDYDDDPEPVEENPEPAYAAPHALNLTLELQQALQAHLLSH
LANQSQVQEQVAHQSLAAMVQNQIPDNTLQNTVHTMDESSIPPSFHQSHVQNRFQTTPLP
EESAVKMDHSADDRDRRHRRSRSRSPQRSSTSRSRRSRSGSRSHRERYHPTRSRSKERQA
RSEERREREKERERRQKGLPSIRKEHVSVCSTTLWIGQLDKKTQKQDIMSLMEEFGQVES
INMIPPRGCAYVVMVHRQDAHTALNKLNRGTVKVNQKSIKIAWALNKGIKSEFKKFWDVE
RGVTYIPWNKVKPDDIQSYRGGGMLDTETLKPEWNISTANPAVPVTGGPEGGHGNRASLI
KVSQSPTVHPVASGNVPPGPPPNMSLPPPAMTTGGPLLAFPPPGFNPAKMPAGFPPAGPV
SRMNTAGPPSSITENPVLYPSKHPLEGRMAHTDLTGGPQLSPSRSLLGHGPLLPHPQLGP
RPPFMPPFPNDMPRPNMPSPNVPPQMMPPRGPNPMYGERPAGRFRMPAVTPPVNDFPPPR
EGFPPRGPPRGPRPVDRWDEEPNWNNRRDHGPENGPERFEPPFHRGGWGRGGHRGRGRFG
N
NT seq
2526 nt
NT seq
+upstream
nt +downstream
nt
atggatatggatgcggtgaacgcctttaacgaggagatgttgtccatgatggacatgcca
cccccgatatctcgagccaaaatgatgtctgtaactaaagcaggaatcaaagctatcaag
ctttataagcatgctgttcaaattgtggagaagttcatcaagaggtgtaaaccagatctg
aaggtcgctggtctctatgtggtcgattcgatcatcagacagtctcgccaccagtttggc
gcagacaaagatgtgtttggtccaagattcttgaaaaacttttccgtgacattccagaac
ctgtacgagtgccctgttgatgacaaggagaagatattacgtgtgctgaatctatggcag
aagaacgatgtgtttggaatggacatcattcagcctttgctggatatggctgcagctcca
gtacttcctgtctttgagaatggcactactgtgggcgtctcactcgctacaccgatgtca
gtaccacagctgtcatcagcttctgcctcagcagtgaccctgcccagtctacagaaccca
gtgtctccacccactctacccaaccctgtggctccaccccacctacagaactttatagct
ccacctagttttcagaacccaggtgccctggctgcagttgcccagttgctccagggcaca
cagggcttagagcagctgcttcagagtctgcagcagagtggaggggcggggctttcacag
tccactgccccacccaccgaacagaagacatcactagctaagagtttactggatcggttt
gattacgatgatgatccagaaccagtggaggaaaaccctgaacctgcctatgctgctcct
catgcgttgaatcttacactagaattacagcaagccctgcaggcccaccttctaagccat
ctagctaaccagtcacaggtgcaggagcaggtggcacatcagagcttggcagcaatggtg
cagaaccaaatacctgacaacacactacaaaacacagtacacaccatggatgaaagcagc
ataccgcccagtttccatcaatcacatgtccaaaaccgcttccagacaacacctttaccc
gaggagtcagctgtgaagatggatcactcagcagatgatcgagacagaagacacagaaga
tcacgatccaggtctccacaaagaagttcaacgtctcgttcacgaagatcgcggtctggt
tcacgctcacatcgggagaggtatcatcccacacgatcccgatccaaagagcgccaagcg
cgatcagaggagaggagagagagagagaaggagagagagcgtagacagaaaggacttccg
tccatcaggaaggaacatgtcagcgtgtgcagcactacgttatggatcggccagctggac
aaaaagactcaaaaacaggatatcatgagtctgatggaggaattcggacaggttgagtct
atcaatatgattcctcctagaggttgtgcttacgttgtcatggtgcacagacaggacgca
cacacagccctgaacaaactcaatagagggactgttaaagtcaaccagaaatctattaag
atcgcgtgggcattgaataagggcattaaatcggagtttaagaagttttgggatgtggag
cggggtgtcacatatatcccctggaacaaagtgaaacctgacgatattcagagttatcga
ggaggtggcatgctggacactgaaacactcaaaccagagtggaacatttctacggccaat
ccagcagtgccagtcacaggaggacctgaaggaggacatggaaatagagcttcactcata
aaggtatcacagagtcccacagttcatcctgtggcctctgggaacgtcccgccgggacct
cctcctaacatgagtctacctcctcctgctatgaccacaggaggtcctcttctagcgttc
ccacctccaggattcaaccccgcaaagatgcctgcaggtttccctcctgccggcccagtg
agccgaatgaacaccgcaggtccaccttccagcatcacagaaaacccggtgttataccct
tcaaaacacccactcgagggccgtatggctcacaccgacctgacgggaggtccacagctg
agtccttcaaggagccttctgggtcatggacccctactgccacatccccaattaggaccc
cgcccgccattcatgccccccttccccaatgacatgccccgtcccaacatgccttctcca
aacgtgccccctcagatgatgcctccccgaggccccaaccccatgtatggagaacgtccc
gctgggagattccggatgcccgcggtgacccctccagtaaatgatttcccccctcccaga
gaaggattccctcctcgtgggccacccaggggacccagaccagtagatcgctgggacgag
gaaccaaactggaataaccggagagatcatggaccagaaaacggaccggagaggttcgag
ccaccattccatcggggagggtggggtaggggtggccatcgtggtcgaggacgctttggg
aactga
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