Triplophysa dalaica: 130429227
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Entry
130429227 CDS
T09616
Symbol
brip1
Name
(RefSeq) Fanconi anemia group J protein isoform X1
KO
K15362
fanconi anemia group J protein [EC:
5.6.2.3
]
Organism
tdw
Triplophysa dalaica
Pathway
tdw03440
Homologous recombination
tdw03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
tdw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
130429227 (brip1)
03460 Fanconi anemia pathway
130429227 (brip1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tdw03400
]
130429227 (brip1)
Enzymes [BR:
tdw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
130429227 (brip1)
DNA repair and recombination proteins [BR:
tdw03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
130429227 (brip1)
FA (Fanconi anemia) pathway
Downstream FA components
130429227 (brip1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD_2
Helicase_C_2
DEAD
HBB
Motif
Other DBs
NCBI-GeneID:
130429227
NCBI-ProteinID:
XP_056613651
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All DBs
Position
9:complement(14752846..14827821)
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AA seq
1406 aa
AA seq
DB search
MAAAPVEYTIGGVKINFPCKAYPSQLAMMNSIIRGLNHGQHCLLESPTGSGKSLALLCSA
LAWQQSQFAKEQDPSIGSSDCKKPEVATPCQCVCHNRDAHPSSSTVESEPTLGNPIGEGT
SVDATTPVSKGVNGDQPKRSTLSSRLSEKLQASITTDREQDDDFQTDKKRLRTPTTEQKS
SKRRCLERGVIFIDDDDEEEDLERPGAGAQRTMEHPQCCSPVSCSFCPCGNLKAGQKTVE
KTKDNEKDKEGGGRKTIPKIFFGTRTHKQITQIARELKRTMYSSVAMTILSSRDHTCVHP
EVVPHANRNERCKELLEAKNGLSCQYYRNVHKMRDQHSLQWVHGLHQAWDIEDLVSLGGK
LRSCAYFAARELMQDALIVFCPYNYLLDPLIRESLEINLKEQIVVLDEAHNIEDCARESA
SFTLNHAQLLLARDEIEGMVTHNIRRDQHTPLLAFCCSLANWVQESSSGLEEREYESSCK
VWTGTETLGIFHGLGITADTFSLLQKNLAAVLEKEERIGLVKGREEFVQVPTISSNTQSM
LKSLFMVLEFLFRHNCRFAGDYRVALQQSYMWTTQPDLPDAQGFFARPQRRRQSTRKKTL
VHTLSFWCLNPAVAFSDLSESVRSIVLTSGTLSPMGSFSSELGIKFSIQLEASHVISKSQ
VWVGTVGTGPQGRKLCATFQHAETFAFQDEVGALLLQVCHTVKRGVLCFLPSYKMLDKLR
DRWMNTGLWEKLEERKTVITEPRGGAKGDFDELLQTYYKAIGGTAADGGTRDGALLVAVC
RGKVSEGLDFTDDNARAVVTIGIPFPNIKDLQVELKMKYNDQHAKSRGLLPGGRWYEIQA
YRALNQALGRCIRHKNDWGALILVDDRFRANPNRYITGLSKWVRQLVRHHDTFTGAMQSL
ESFSQSQQEAVETFEKTYSHAAPPLPSPSLVSFTATSPPPEIIGLHNLSDPKPAQPKPHT
EVQNANSESDQKNLQHPSKPITSPDRERNVQRTVLTPGHLFSSTPVSSPFRTPIFQSERS
KKVVSHDAKSLDKKQEVVPRLPVEPTQQTSHAPDLNVNGPPPECQKLSVATSKQDTSGTD
LEDIEEDEQSIFYSPELFEGNEEEKEEKPVTEVEKIPLNTQVNDSPANSKAEVFSEEFFG
SEQARRTLSKDLLSSAVPDDPLFQRNLEQTDSSSAEFENGPSFLKGSSSSLSHRLSRSRQ
KRPSMPGTSAGQSSDVLVRFRETVPFKTQAERLQLDHGNTRSRPPESVKQNLRQKMRGHG
LSKTKTWRNERLKIDVAEASELQNSSDVENVVLRPQYSHARAHPALVSMKRQKLRKTVQP
LAQSPLGISPVVLTPEFLENKKCQTDTFKTSKQPQPALNDRSEIKKTGIKVMRSYSRKNQ
QPKRLKIASETRLSQIQSGYPVDLPL
NT seq
4221 nt
NT seq
+upstream
nt +downstream
nt
atggctgcagccccagtggagtacaccataggtggagtaaaaataaacttcccatgcaaa
gcttatccctctcagctggccatgatgaactcgatcattcgtgggcttaaccatggccag
cactgtctgctggagagtcctactggcagcgggaaaagtcttgctcttttgtgttcagcc
cttgcgtggcagcaatcccagtttgctaaggagcaggatccaagtattggctcaagtgac
tgtaagaaaccagaagtggcaactccatgtcagtgtgtgtgccataaccgagatgctcat
ccctcttccagcactgtggaatcagaacccactttgggtaatccgatcggtgaaggtact
tctgttgacgctacaacccctgtttcaaaaggagtcaatggtgaccagccaaaaaggtcc
acattgtcttcccgtctctctgagaaacttcaagcctccattaccactgacagagaacaa
gatgatgattttcaaactgacaagaagcgccttcgcacaccgacaacagagcaaaagagt
agtaaacggagatgtcttgagcgaggggtgatttttattgatgatgatgatgaagaggag
gatctggagagacctggggctggagcacaaaggaccatggaacatccacagtgttgttct
cccgtgtcttgttctttctgtccttgtggcaacctcaaagcaggacagaaaacggttgaa
aagaccaaggacaacgaaaaagacaaagagggaggcggaaggaaaacgattccaaagatc
ttcttcggcacacgcactcataagcagatcacacagatcgcgcgggagctaaagcgaaca
atgtactccagcgtggccatgactatcctctctagtcgtgaccacacttgcgtgcatccc
gaagtggtacctcatgccaatcgcaacgagcgctgcaaggagctgctggaggccaagaat
ggcttgtcatgccagtactaccgtaatgtgcataaaatgcgagatcagcactcattgcag
tgggttcatgggctgcaccaggcctgggacattgaggatctggtgagtctcggcggtaaa
cttcgctcctgtgcatacttcgctgctcgggaactcatgcaggatgccttgattgtgttc
tgtccctacaactatcttctggaccccctcatccgtgagagtttggaaattaatctgaag
gagcagattgtagtgctggatgaggctcataacattgaggactgtgcccgtgagagtgcc
agttttactttgaatcacgcccaactacttctggcacgagatgagatcgaaggaatggtg
acgcacaatattcgtcgagatcagcacacgcctctgctggccttctgctgcagccttgcc
aattgggtgcaggaaagctccagtggcttggaagagcgtgagtatgagtcttcttgtaag
gtctggacagggacagagactcttggtatcttccatggcttaggcatcactgcagacacc
ttctcattgctgcagaaaaaccttgcagcagtgctggagaaggaggagcgaattgggcta
gtgaaaggaagagaggagtttgtgcaggttcccaccatcagctccaacactcagtcaatg
ctcaaaagcctttttatggtgctggagttccttttcagacataattgcagatttgcaggt
gattaccgtgtagccctccagcagagttatatgtggaccacccagccagacctgcctgac
gctcagggatttttcgcacggccccaacgtcgccggcaaagcacccgcaaaaaaaccttg
gtgcacaccctgagcttttggtgcctcaaccctgccgtggcgttctcagatctgagcgaa
tcagtgcgaagtattgtgctgacctcaggcaccctctctcccatgggctcattttcctct
gaactgggcatcaagttctccatccagctggaggccagtcatgtcatcagcaagtcacag
gtctgggtcggtaccgttggtacagggcctcagggtcgaaagctatgtgccacattccag
catgcagagacttttgcatttcaggatgaagtgggagccctgctgttgcaagtgtgccac
acagtgaaacgcggggtgctttgcttcctgccgtcctacaagatgctggataaactgagg
gaccgctggatgaacacaggcctgtgggagaagcttgaggagcggaagactgtgatcacg
gagccacgtggtggtgccaagggtgactttgatgagcttctgcagacctactataaggcc
atcggtggaacagcagccgatggtggaactagagatggagctctgttggtcgctgtctgc
agagggaaggtgagcgagggcttagacttcactgatgacaacgccagagcggtggtcact
attggcatccctttcccaaatatcaaagatttgcaggttgaacttaaaatgaaatacaat
gaccagcatgccaaatcacgagggcttctgcctggtggtcgctggtatgagattcaagca
tatcgggcgctaaaccaagcattaggaaggtgtattaggcataaaaacgactggggggcg
ctgattctggttgacgatcggttcagggcaaacccaaacagatacatcacaggcctgtca
aaatgggtgcgtcaactagtgaggcaccatgacaccttcacaggcgccatgcagtccttg
gagtccttctcgcaatcccagcaggaggcagtagagacctttgaaaagacgtattctcat
gctgcccccccattgcccagcccctcactggtcagcttcactgctacctcaccccctcct
gagataatcggcctccacaatctatctgacccaaagccagcacagccaaaaccacacact
gaggttcagaatgccaactctgagagtgatcaaaagaatctccagcacccatccaaacca
atcacttcaccagatagagaacgtaatgttcaaagaacagtgctgactccgggccatctc
ttctcctccactccggtcagcagcccatttaggacccctatctttcagtcggaacgatca
aagaaagtggtttctcatgatgcaaaatcattggacaaaaaacaggaagttgttccaaga
cttcctgttgaaccaacgcaacaaacaagtcatgctcctgacttaaacgtgaatggtcct
ccacctgagtgccaaaaactctctgtggctacctccaagcaggacaccagtggaactgat
cttgaagacatagaggaagatgaacagagcatcttctacagtcctgagctgtttgaagga
aacgaggaggagaaggaggaaaagcctgttacagaggtggagaaaattcctctgaataca
caagtcaacgacagtcccgctaatagcaaagctgaagtattttctgaggaattctttggc
tcagagcaggccaggaggacattgtccaaagaccttttaagcagcgcagtcccagacgat
ccattatttcagcgtaatttagagcagacagacagctctagtgcagagtttgagaatggg
ccttcctttctaaagggttccagcagtagcctgtcacataggctctccagatctagacag
aaaaggcccagcatgccaggaacatcagcaggtcagagttcagacgtcctggtaaggttc
agggagacagtgccattcaagacccaagctgaacgtctacagttagatcatggaaacacc
agatcaaggcctccggagtcagtcaaacaaaaccttaggcagaaaatgagaggccatggc
ctgagcaagactaagacatggaggaatgagagactgaaaatagatgtcgctgaggcctct
gaacttcaaaatagtagtgatgtagaaaatgtagttttaagaccacaatacagccatgct
cgagcacatccagcgctagtgtcaatgaagcggcagaaacttagaaaaacagttcagccc
ctagcccagagtcccttggggatatctcctgtggtcttaactccagagtttttagagaac
aaaaagtgccaaacggacacttttaaaacatcaaagcaaccgcaaccagctctgaatgac
agatcagagatcaagaaaacaggtatcaaggttatgaggtcttactcaagaaagaaccag
cagccaaagaggcttaaaatagcatctgagaccagactttcccaaatacagagtggttac
ccagtcgatctgcctctttaa
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