Triplophysa dalaica: 130429229
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Entry
130429229 CDS
T09616
Symbol
lrfn1
Name
(RefSeq) leucine-rich repeat and fibronectin type III domain-containing protein 1
KO
K16354
leucine-rich repeat and fibronectin type-III domain-containing protein 1
Organism
tdw
Triplophysa dalaica
Brite
KEGG Orthology (KO) [BR:
tdw00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
tdw04515
]
130429229 (lrfn1)
04990 Domain-containing proteins not elsewhere classified [BR:
tdw04990
]
130429229 (lrfn1)
Cell adhesion molecules [BR:
tdw04515
]
Immunoglobulin superfamily
SALM family
130429229 (lrfn1)
Domain-containing proteins not elsewhere classified [BR:
tdw04990
]
Fibronectin (FN) domain-containing proteins
Fibronectin type III domain-containing proteins
130429229 (lrfn1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_8
Ig_3
I-set
LRR_4
fn3
LRR_5
Ig_2
ig
LRR_9
Ig_DSCAM-DSCAML_C
C2-set_3
DUF1539
LRRCT
Motif
Other DBs
NCBI-GeneID:
130429229
NCBI-ProteinID:
XP_056613661
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Position
9:complement(3130458..3366362)
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AA seq
750 aa
AA seq
DB search
MERLVFYVLVFGLLAKAQHCPGRCICQTISPTLTLLCAKTGLLFVPPTIDRKTVELRLTD
NFITSVRRKDFLNMTSLVHLTLSRNTISQIAPHAFVGLKALRALHMDGNRLTLINSDQLK
GLINLRHLILGNNQIHQVESSTFDEFVSTIEDLDLSYNNLRTLPWEAIARMTNINTLTLD
HNLIDYIGVGTFTLLTKLVRLDMTSNRLQNLPPDTLFHHAQVLSDPKISSSSKLTVSFGG
NPLHCNCELLWLRRLTREDDLETCASPEHLMDKYFWSIQEEEFICEPPLITKHQVTKPYV
MEGQGVTLKCKAMGDPEPAMHWRFPDGKLVHNNSRTILYDNGTLDILITTLKDSGAFNCV
ASNAAGIATAAVEVNMIPLPLFVNNTGHMREADPGLSDITTSTKSGNNDTKSQNKRVVVE
ELTSSSAIIHWPSERHIPGIRMYQIQYNSTVDDTLVYRMIPSASKTFKINDLAAGREYEL
CVLAVYDDGITSLTATRVVGCVQFHTAAEAGQCRFIHSQFLGGTMIIIIGGIIVASVLVF
IIILMIRYKAYSASDAAKGKVRCGRSAAHVHSQTNGSQGRSRSKQRMQPAEERPSPTGED
CKALVLLKIEETQEELKVDLPLICSEKAPPSRRASLGGLPSDDTQTDSSLTGSTMSLCLI
GPGAGPAEAPRFRERKGALANMGLLPSELARTRHRFSFDGDYALFQSHSYPRRARTRRHK
STTQLNTDVSPACSRRVTFSSTEWMLESTV
NT seq
2253 nt
NT seq
+upstream
nt +downstream
nt
atggagaggctggttttttatgtgttggtgttcggcctgctggcgaaggctcagcattgc
ccgggtcgatgcatctgtcagaccatctcacccacgctcaccctcctgtgtgctaaaacc
ggacttctgttcgtgcccccgaccatcgaccgcaagaccgtggagctccggctgaccgac
aacttcatcacgtcagtccgcaggaaagatttcttgaacatgaccagtctggtacacctg
acgctgtcgcgcaacaccatcagccagatcgcaccgcacgcgttcgtgggactcaaggct
ttgagagcgcttcacatggatgggaaccgtctgaccctcattaacagcgatcagcttaag
ggtttgattaacctgagacacttaatactgggcaataatcagattcatcaggtggaatcg
tccactttcgacgagttcgtgtccaccatcgaggacttggatttgtcatacaacaacctg
aggacgttaccatgggaggcgatagcaagaatgacaaacatcaacacgttaacgctggac
cacaatctcatcgattacatcggagtggggaccttcacattgctcacaaagctggtgcga
ttggatatgacgtcaaaccggctgcagaatttaccgcccgacactctgtttcatcacgcc
caggtgctgtccgacccaaagatatccagttcctccaaactgacggtgagcttcggcgga
aaccctcttcactgtaactgtgagctgctgtggttgcgtcgcctgacgagagaagatgat
ctggagacctgcgcttctccggaacatctgatggataaatacttctggtctatccaggag
gaggagttcatctgtgagccgcctctcataaccaaacaccaggtgaccaaaccctacgtc
atggaaggtcaaggggtcacgttaaaatgtaaagcgatgggcgaccctgaacccgcaatg
cactggcgctttccggacggcaagttggtgcacaataactctcgtaccattctgtatgat
aatggcactctggacatcctcataaccaccctgaaggacagtggggcgttcaactgcgtt
gcatccaatgctgccggaatcgcaacggctgccgttgaggtcaacatgatccccttacct
ctgtttgtgaacaacacaggtcacatgagagaggctgatccggggctctctgacatcacc
acctccaccaaatctggcaacaatgacaccaagtctcagaacaaacgggtggtggtggag
gaactgacgtccagctcggctatcatccactggccctcagaacgccatattcctggaatc
agaatgtatcagatccagtacaacagcaccgtagatgacacccttgtatacaggatgatt
ccctccgcgagcaagacgtttaagatcaatgatctggctgctggtcgagagtacgagctg
tgcgtgttggccgtgtacgatgacggcatcacgtccctgacagcgacacgtgtggtgggc
tgcgttcagtttcacacagcagcagaggcgggtcagtgtcgcttcatccacagtcagttc
ctcggcggaaccatgatcatcatcatcggcgggatcatcgtggcgtccgtcctcgtcttc
atcatcatcctcatgatccgttacaaggcctacagcgcaagcgatgcagctaagggcaaa
gtgcgatgcggcagatctgccgcgcatgttcactcgcagaccaacgggagtcaggggcgg
agcaggtccaagcagcgaatgcagccggccgaggaacggccctcccctacaggggaggac
tgtaaggcgctggtccttctgaagatagaggagacgcaggaggagctcaaggtggatctg
ccgcttatatgctcggagaaagctccaccttccaggcgggccagtttaggcggtctgccc
tctgatgacacccagacagatagcagcctcacaggctccaccatgtccctgtgcctgatc
gggcccggcgctggccctgcggaggcgccgcgtttcagggagagaaagggggcgctggcg
aacatggggctgctgcccagcgagctggcccggactcggcacaggttctccttcgatgga
gattacgctctgttccagagccacagttacccgcgacgggccagaacccgccggcacaaa
tccaccacccagcttaacactgacgtgtcgccggcctgcagtcgaagggtgacgtttagc
agtacggagtggatgttggagagtacggtgtga
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