Triplophysa dalaica: 130429346
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Entry
130429346 CDS
T09616
Name
(RefSeq) polyadenylate-binding protein 1A-like isoform X1
KO
K13126
polyadenylate-binding protein
Organism
tdw
Triplophysa dalaica
Pathway
tdw03015
mRNA surveillance pathway
tdw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tdw00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
130429346
09123 Folding, sorting and degradation
03018 RNA degradation
130429346
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tdw03019
]
130429346
03041 Spliceosome [BR:
tdw03041
]
130429346
Messenger RNA biogenesis [BR:
tdw03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
130429346
mRNA cycle factors
Stress granule specific factors
130429346
Spliceosome [BR:
tdw03041
]
Complex C
Other components
Complex C specific factors
130429346
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_7
RRM_Nup35
RRM_10
RRM_3
RRM_8
Motif
Other DBs
NCBI-GeneID:
130429346
NCBI-ProteinID:
XP_056613821
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All DBs
Position
10:complement(16671219..16674433)
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AA seq
523 aa
AA seq
DB search
MASSASARVASLYVGDLHLEVSEVMLYERFIPFGPIQSTRVCRDRNTCRSLGYGYVNFVN
HSDAEHAMDILMFDLLMGRPMRIMWADRNPALRITGVGNIFIQGLAKNITNLTLHDTFSR
FGTILSCKVVADENGSKGYGFVHYETYEGAERAIQTLNGMMLNDQLVSISHFRSFQERQS
NPERAMKNYKSHFPGVHLYVNNLPYSWTDKQLHRAFSPFGTVTNAKVVMNGGRSKGFGFV
CFASREAAAQAISAMNGRVIANRRLNVAFSRVMDQDTSVSVAHCETPPVVAKTLLPSGRF
GAIVPQANTGHQLTRHLQLESCCRREAAYLLSNCESLVSLVSPLLLDMLVSHTPVDALQH
VNQELSELMSDPIIVLPGTSDTFSAVTSPLSGDFGAVVPKTHSSAGHQFSRCLVFSRRWF
ADVALPHCESLVLLVSPLLSDTFDSETPRMLTVNQEQSEMTPDRATDAPGPSDACSDVAV
VHDRFGNGLGKIRHMSSFKAGEISWFFKDLHSTQFFTLRVIFH
NT seq
1572 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcatcagcatctgctcgcgtggcctctctgtatgtcggtgatcttcacctggag
gtctcagaggtcatgctgtacgaaaggttcatcccgtttggcccgattcagtccacccga
gtgtgtagagacagaaacacctgcaggtctctgggctacggatatgtgaactttgtcaac
cattcggatgccgagcatgcaatggacattttgatgtttgacctcctcatgggtcggccg
atgcgcatcatgtgggccgaccgaaaccccgcattgaggatcacaggtgttggcaacatc
ttcattcagggtctggccaagaacatcaccaacctgactctacacgacaccttctctcgt
ttcggcaccatcttatcttgcaaggtggttgctgatgagaatggctctaagggatatggt
ttcgtccattatgagacctacgaaggcgctgaacgagccattcagaccctcaacgggatg
atgctgaacgatcagctggtgtctattagtcacttcagatcgttccaggagcgtcagtca
aaccctgagcgtgcaatgaagaactacaagagtcacttcccgggggtgcatctctatgtt
aataatctaccctacagctggacggacaaacagctgcatagagcgttctccccgtttgga
accgtcaccaatgcaaaggtggtgatgaacggtggccgcagcaaagggtttggatttgtg
tgttttgcaagccgcgaagccgcagctcaagccatttcagcaatgaacggacgggtcatt
gccaacagacggctgaatgttgccttctcgcgggtcatggaccaggacacgtctgtgtct
gtggcccactgtgaaacacctcctgtggttgctaagacgctgcttccttctggacgcttt
ggtgccattgttccacaggctaatactggtcatcagctcaccagacaccttcagcttgag
tcctgctgtcgtcgggaagcagcgtatctcctgtctaactgtgagagtcttgtctcgctg
gtctctccactgctgttagacatgctggtgtcccacacgccagtagatgcactgcagcat
gtgaaccaggagctgtcagagctgatgtctgatcccatcattgttcttcctggaacatca
gacaccttcagcgctgtaacctctccgctgtctggagacttcggtgctgtcgttccaaag
actcatagcagtgccggtcatcagttctccagatgtcttgtgttcagtcgtcgctggttt
gcagatgttgctctgcctcattgtgagagtctcgtcctcctggtctctccactactgtca
gacacttttgactctgagacgccccgcatgctgaccgttaaccaggaacagtcagagatg
acgcccgaccgagccaccgacgctcctggaccatcagacgcctgcagtgatgttgctgtg
gttcacgacaggtttggcaacggtttgggtaagataagacacatgagcagcttcaaggca
ggagaaatctcttggttttttaaggatttgcactcgacacagttcttcacattaagggta
atctttcactaa
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