Triplophysa dalaica: 130430050
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Entry
130430050 CDS
T09616
Symbol
rc3h1a
Name
(RefSeq) roquin-1a
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
tdw
Triplophysa dalaica
Brite
KEGG Orthology (KO) [BR:
tdw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
tdw03000
]
130430050 (rc3h1a)
04121 Ubiquitin system [BR:
tdw04121
]
130430050 (rc3h1a)
Transcription factors [BR:
tdw03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
130430050 (rc3h1a)
Ubiquitin system [BR:
tdw04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
130430050 (rc3h1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-RING_UBOX
zf-RING_2
zf-C3HC4_3
zf-CCCH
zf-C3HC4_4
Prok-RING_4
zf-C3HC4
zf-CCCH_4
zf_CCCH_4
FYVE
Baculo_IE-1
RA_3
RA
RING_XB3-XBAT31
zf-C3HC4_2
Motif
Other DBs
NCBI-GeneID:
130430050
NCBI-ProteinID:
XP_056614936
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All DBs
Position
10:complement(8797517..8813503)
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AA seq
1057 aa
AA seq
DB search
MPVQAPQWTEFLLCDICTQTFEESNRKPISLGCGHTVCKMCLNKLHRKACPFDQTAINTD
IEQLPVNTALLQLVSGQVLKPQPVTLLTDEEDIKNYEESRTCVEDLALYLKPLSNTRGAA
VNGVAQSVLSRPMQRKLVTLVHCQLVEEEGRIRAMRAARSLGERTVTELILQHQNPQQLS
SNLWAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKT
SIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDSQIVQIAMEGGLRIAP
DQWSSLLYGDQSHKSHMQSIIDKLQTPASFAQSVQELTIALQRTGDPANLNHLRPHLERL
ADIDPSPDAPAPTWEQLSKGLEAVRTVVHGLVDYIQNHSKKGGDQQQPPQHSKYKTYMCR
DMKQKGGCPRGASCTFAHSQDELEKYRKMNKRLGLRRQLSQSLTQLNEIDMGLLSEDSPV
IEGFPRKSASITNGILAAGSGSNITHLVSRGSDPSYDPSHKSAKMDSGSLSAPGSPPDSL
ESIPKATMSHSRMANDGQKHISHMYPSHPSDLYYPETRAPSTQYESPQYSAANPYPHHHA
HQRYARHPAPPSDPGMPPYPDSYSSSYTSERQYSNPSSHYGYSSHHDGRRHPAYPSHAHP
QAFPPREEYVRRSPAPMDAPPLQSQNAGNSYLPESGQERYVSENYNHSRNYHRSAYARPQ
PSLDYLLGRRQEIMAQLEQRKVASPTPFGSTPSYDSSYPQDTRGQSHYMEDNSYAFGHLH
EPEYTTSYSPWSCDTFGSCIGSKDRKSKGGSMEPNLDKGKGLRPHGMELQRRAADVKDDD
PIIPFGSLPTVSRFGAISRTSKQGYPPNNQIPTSGKHATAAEYTYGNHSEWSGDSYQHHQ
MSQGHLSERSPAVQAREQLRMELQRVNQEINQQTQSRMEISSSRADWSSGSLSSEQLSLE
LHQVEREIGKRTQERSMENHDGKYKLVSVENGKEERALKRDEHPLTLSETSNGSMVLAQD
LSLMSSSMSSLTSKTSSLSLSSEQVASSPDLPKNGHS
NT seq
3174 nt
NT seq
+upstream
nt +downstream
nt
atgcctgtgcaagccccgcaatggaccgaattcctgttgtgcgacatctgcacacaaacg
ttcgaggagagcaatcgcaagcccatcagtctgggatgcggccacaccgtgtgcaaaatg
tgcctgaacaaactgcatcgcaaggcctgccccttcgaccagaccgccatcaacaccgac
atcgagcagttacccgtcaacaccgccctgctacagctagtcagtggacaggttttgaaa
cctcaaccagtcaccttactgacagacgaagaggacatcaagaactatgaggagtctcgc
acgtgtgtggaggacctggccctctaccttaaaccacttagcaacaccagaggtgcagcg
gtgaatggtgtcgctcagagcgtgctcagcagacccatgcagaggaagctggtaacgctg
gttcactgccagcttgtagaggaagagggccgaataagagccatgagggccgccaggtct
ctgggcgagcgtacagtcactgagctcatcctccagcaccagaaccctcagcagctttcg
tctaatctgtgggcagccgtgagagccaggggatgccagtttcttggccctgcaatgcag
gaagaggcgttgaagcttgttctgcttgcattggaggacggttccgccctctcacggaag
gttctggtcctgttcgtggtccaaagactcgaacctcgctttcctcaagcatcaaaaacc
agcatcggtcacgtagtgcagctcctctacagggcctcctgcttcaaggtgaccaagcgc
gatgaggattcctctctaatgcaactgaaggaggagtttcgtacctacgaggctcttcgg
agagagcacgactctcagatcgtacagatcgctatggagggcggactgcgtatcgcacct
gatcagtggtcctcgctgctgtatggggaccagtcccataaatctcatatgcagtctatt
atagataagttacagacgccagcgtctttcgctcaaagcgtacaggagctcacaatagcc
ctgcagagaaccggagatccagccaatctgaaccacctccgacctcacctggagcggctg
gctgatattgaccccagtccagatgctcctgcaccgacatgggagcagctttccaaaggg
ttggaagcagtgcgaacggtggttcacggtctggttgactacatccagaaccacagcaag
aaaggaggagatcagcagcagccaccccaacacagcaagtacaagacctacatgtgccga
gacatgaaacagaagggaggctgtccacgcggagcaagctgcaccttcgcccactctcag
gacgaactggaaaagtaccgtaagatgaacaaacgactgggactgcgccgtcagctcagc
caatctcttacccagctgaatgagattgacatgggtttgttatccgaggacagtccggtg
atagaggggtttccgcgcaagtctgcctccatcaccaacggcattctagcggcaggcagt
ggctctaatataacccatctggtgtcaagaggatcagacccgtcttatgacccatcccac
aaatcagcaaagatggattcggggagtcttagtgccccgggatcacctccggactcattg
gaatctattccgaaagcaaccatgtcccactccaggatggcaaacgatggacagaagcac
atttctcacatgtatccatcacatccatctgatctgtactaccctgagaccagagcacca
tctacccaatatgaatccccccagtattccgcagcaaatccttacccccaccaccacgcc
caccaaagatacgcccgccatcccgctccaccttcggatccgggcatgccaccctaccca
gactcgtattccagctcttacacctcagaacggcagtattccaacccatcttcccattac
gggtactcctcccaccacgacggacgcaggcacccggcgtacccaagccacgcccatccc
caagcgttccctccacgagaagagtatgtccggaggagtccagcgcccatggacgcccca
cccctacagtctcaaaacgccggcaactcgtaccttccagaatcaggtcaggagagatac
gtctccgagaactataaccactcgaggaattatcacaggagtgcctacgctcgtccacaa
ccctcgcttgactacctgctaggccgcagacaggagatcatggctcagctggagcagagg
aaagttgcctctcctacgcccttcggctccacgccgtcatacgactccagctatcctcag
gacacgaggggacaaagtcattacatggaggacaactcgtacgcttttggacatttgcat
gagccagagtacaccacctcgtattctccttggtcgtgcgacaccttcgggtcttgcatt
ggcagcaaagataggaagtccaaagggggttcaatggaaccaaacttagacaagggcaaa
ggtctgagacctcacgggatggagcttcagcgcagagcggcagacgtcaaagacgacgac
cccattattccctttggctccctgccgaccgtgtcccgcttcggagccatctcgcgcacg
tctaaacaaggctatccgcccaacaaccaaataccaacctctggaaaacatgcaactgct
gctgaatacacctatggaaaccacagcgagtggagcggtgactcctatcagcaccaccaa
atgtctcaggggcaccttagtgagcggtccccagcggtgcaggcgagagagcagctgagg
atggagcttcagcgggtcaaccaggagatcaaccaacagacgcagagtcgcatggagatc
tcgagctctcgagcggactggtcctctgggagtctgtcgagcgagcagctgagtctcgag
cttcaccaggtggagcgagagatcggcaagaggacacaggagaggtccatggagaaccac
gacggcaagtacaagctggtctcagtcgagaacggcaaagaggaacgcgctctgaagcgt
gacgagcacccgctgactctcagcgagacctccaacggctccatggttctggcacaagac
ctcagtctcatgagcagcagcatgtcctcgctgaccagcaagacatcatctctcagtttg
tcctctgagcaggtggctagcagccccgatctgcccaagaacggacactcctag
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