Triplophysa dalaica: 130430601
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Entry
130430601 CDS
T09616
Symbol
slx4
Name
(RefSeq) LOW QUALITY PROTEIN: structure-specific endonuclease subunit SLX4
KO
K10484
structure-specific endonuclease subunit SLX4 (BTB/POZ domain-containing protein 12)
Organism
tdw
Triplophysa dalaica
Pathway
tdw03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
tdw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03460 Fanconi anemia pathway
130430601 (slx4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
tdw04121
]
130430601 (slx4)
03400 DNA repair and recombination proteins [BR:
tdw03400
]
130430601 (slx4)
Ubiquitin system [BR:
tdw04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul3 complex
Adoptor and target recognizing subunit (BTB)
130430601 (slx4)
DNA repair and recombination proteins [BR:
tdw03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
130430601 (slx4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Slx4
BTB
zf-C2H2_jaz
zf-met
zf-C2H2_6
zf-C2H2_4
zf-C2H2
Motif
Other DBs
NCBI-GeneID:
130430601
NCBI-ProteinID:
XP_056615724
LinkDB
All DBs
Position
10:17365030..17375767
Genome browser
AA seq
1651 aa
AA seq
DB search
MDDSDLDFTDLCSRLLKRVRRKGAGRSGDEKKPAANDEDQSSPRRNPPKRRKKTKDIKTE
IKIDPNERIQPGDVPQPAPAVPEPTRVKDVVILRMQQFKRSSPQRLLHTDTDQPTTSQAD
INNAEVQHSEDVSSDEALALQLQEELDREARPAVDDGGLFFCQLCQKDLSPMSSQLRTQH
INRCLDAGEVSAPSTSHQSHPRPHVPECPICGKSFKSEKARSVHLKRCSTDMGVSPNDLL
QALRRQAADAVGDGTTEQSRPTGVTKRRNGAPAKKKSRRKGQPLDEDTMMALALSRSLLE
QEKEKKREMKEEREIQAQLSSPPALRWKPGAGKGRGKRRKGASPVQPPLLLVQDPQTALN
RLQERVSSLLLCSRSPSPPTPTLSPSTLPDSSQAPLWLKSALHGGGPDSVLEFYTSELSD
FIQPLIAPEKEKLKNLEVTPVKKPPAPTTETAQEVCPDQIPAQHRSALSPLTPCSGTPGT
QALQDLMDLAEEGMTLTQYGYNTNTATDKDNDVNELPSSGFVPETNNKTIKTPSVSFSKL
ASDLSSMVNNPQLSNVQLQVDSGDVFFTHSFMLYTRCPLLANMVYDSGFGVQEEGMPVSQ
RVLLGDVPGAAVLALLKYLYTAHCPLTRSLLPHVQQLADRFCLAELQQQCEEYSRTSEED
PRGESEGMFSAQEPHLSEKEDQNLAESNFLELLQSMWQHEDSEGENEFKEDAGERRGVEE
EAERVDVEYKEDRVDEEELDEIYEFAATQKKIENTLETATETEEDEGDTNKSVRNEKEDE
GISENETESRWEKSVASFHCKEGVDGTEAAMVTSLAEIHQKQNPDTGPKVCLLSESDAPE
NNNKDVSLDKSYNRLFSQSVGEYTEPSQTATSCQQHYTSSHTPQRKTPVFRPSFASEVID
LSISPPPSSSVSGESSFPVPGVSPGPSPGPDNEMGLSEQSCHRNPPSPSESHSKQVELIV
LSDSSDQMDVEPEGGGLSPQSPSGSLPDSAFKSRSNVCESKLDTPNSFVSAFQSHTGKQV
NIDTELKSDQSEHHSPCAANQSVFDGSAEVSWLIPATPVPVARSSSAQTCVSMRRTQLFP
KSCSSSSSSSSTVFNASKSSANNGYAGENPEPSSKPLSNCPLNSDQSPTKEHFSKNVKRS
PGYQTPLHLLRLSQIPSKRLSDGSHAGFINGHPSQSVRQPASSTPLHSDSSLQRQTLSVG
QQASLSLQLSHSESYQSLAKLQRRREITVIFSMGPLISHQTLQAIIILKVKRECARTNGV
GDEVQNHSVEEVNVEEISPQASFCVMDEPPIPFDDSWGLDGNVGSQKPCFSLRLDSSEGT
VSPARTESRRPEASTRTKSPAAGAQMKTPEPSPGPFNHSLPDPDMWDDWEEKEEELLPLS
QRLAPPSAKRVAALKTPVACRNRNEAPLIPITPMPGFSDMDTPELKNRLNRFGVRPLPKK
HMVLKLKEIHQYTHQLQSSESEEETCPPLHASKSQSAQLSFKQPTAPPAVSSAKPQASDE
DELLSASQNSTTSSTAESDRSNPELCVSEGDDSDSEGITSSQAVVREKDKLLAVRRFILS
DPKLHGRVLQYQPIPLVELQASLKAAGIRLGAPKLLDFLDSQCITFSTAKQGQNTSSRRK
QKRKVGTSGPGDAAVNRRKKAAKPNKAISVA
NT seq
4956 nt
NT seq
+upstream
nt +downstream
nt
atggacgattcagatctggacttcaccgacctctgctctcgtctcctgaaacgagttaga
cgaaaaggagccggacgatctggagatgagaagaaaccagcagccaatgatgaagatcaa
tcctcccctcgtagaaaccctcctaaaaggagaaagaagacgaaggatataaagactgaa
attaagattgacccaaatgaaaggattcagcctggagatgttccccaacccgcccctgct
gtaccagaaccaacgagggtgaaggatgtagtgatcctcaggatgcaacaatttaagaga
tccagtccacagagactcctgcatacagacactgatcagcccacaacttcccaagctgat
ataaacaatgctgaggttcaacactcagaggatgtaagcagcgatgaagctctggctctt
cagcttcaggaagagttggatcgtgaggctcggcctgctgtggatgatggaggtttgttc
ttctgtcagctctgtcagaaggatttgtcgcccatgagctcccagctacgcactcaacac
attaacagatgtctggatgcaggtgaggtcagcgctccatccacatcccatcaatctcat
cccagaccacatgtcccagaatgccccatatgtggcaagagttttaagtcagaaaaagct
cggtctgttcacctgaagcgttgctcgactgatatgggtgtgtcgcccaatgatctgctc
caggctttgcggaggcaggctgctgacgctgtgggtgacggcaccacggaacagtcccga
ccaacaggtgtcacaaaaagaagaaatggtgcgcctgcaaaaaagaaatctagaaggaaa
ggtcagccgttagacgaggacaccatgatggcgctggctctgtctcgctctctacttgaa
caagagaaggaaaagaagcgagagatgaaggaggagagagagatacaagctcagctctca
agtcctcctgcgttaaggtggaaacctggtgcaggtaagggtcgtggaaagagaagaaag
ggggcatctcctgttcaaccgcctctgcttctcgttcaggaccctcagacagcactgaac
cgtctacaggagcgcgtctcttctcttctgctctgttcgagatccccctctcctccaaca
cccaccctgtccccgtccaccctcccagacagttctcaagctcccctctggctcaaaagt
gctcttcacgggggaggaccagactccgttttagagttctacacatctgaactcagtgac
tttatacagccattgatcgcacctgagaaggaaaagctcaagaatcttgaagtaactcca
gtaaagaaacctccagcaccaaccacagaaactgcacaggaagtgtgtccggatcagatc
ccagcgcagcaccggtctgccctgtctcctctcacgccctgttcaggcacaccaggcacc
caggccctgcaagacctgatggatctggcagaggaaggcatgacactcacccagtatgga
tacaacacaaacacagctacagataaggataatgatgtgaatgaacttccttcaagtggt
tttgttccagagacaaataacaagaccatcaagacaccatcggtgtctttttcaaagctt
gcatctgatctgagcagtatggttaacaaccctcagctgagcaatgtgcagttacaggtg
gacagtggggacgtcttcttcactcactcgtttatgctctacacccgatgccccctgctg
gccaacatggtatatgactctggttttggtgttcaagaggagggtatgccagtttctcaa
agggtgttgttgggtgatgtacctggggcagcagtgttggcactcctgaagtacctttac
actgctcactgtcctcttacccgctcactgctacctcatgtacaacagcttgctgatagg
ttttgtttggctgagctacagcagcaatgcgaggaatattctagaactagcgaggaagac
ccgagaggagaatccgagggcatgttttcagctcaagagcctcatctcagtgagaaggaa
gaccagaatctggcagagagcaacttcctcgagctcctccagtcaatgtggcagcatgag
gacagtgaaggagagaatgaatttaaggaggatgcaggcgagcgaagaggtgtggaagaa
gaggcagaaagagtggacgtagagtataaagaagacagggtggatgaggaagagctggat
gagatctacgagttcgctgcaactcagaaaaaaattgagaatacgttggaaactgcgaca
gagaccgaggaagatgaaggggatacgaacaaatcggtcagaaatgaaaaggaggatgaa
gggatctcagaaaacgagacagaatcccgttgggagaagtctgtcgccagtttccattgt
aaagaaggcgtggatgggacagaagctgccatggtaacaagtctggccgagattcatcaa
aagcagaatccagacacagggcctaaagtttgtttgctttctgaatcagatgcacctgaa
aacaacaacaaagatgtcagtctagacaagagttacaaccgattgttctctcaatctgtg
ggggaatatacagaaccgtcacagacggcaacctcctgccaacaacattacacgtcatcg
cacacaccgcagcgaaagacacctgtatttcgcccatcatttgccagtgaggtcatcgat
ctgtctataagccctccgccaagctcaagtgtgtcaggtgagtcatcttttccagtgcct
ggtgtgtctcctggtccgtctcctggtccagataacgaaatgggtctgtcagaacagagc
tgtcacagaaaccctccctcaccttcagaatcacacagcaaacaagttgagcttattgta
ctttcggattccagtgaccaaatggacgtggaacctgaggggggtggtttgagccctcag
tctccctccggttcgctcccagattccgcttttaagtccagaagcaatgtttgcgagagt
aaactcgacacaccgaacagttttgtatctgcgtttcaaagccatactgggaaacaggta
aatattgatacagaacttaaatctgaccaatcagagcatcatagcccgtgcgctgcaaac
caaagtgtatttgatggctctgccgaagtttcctggttaattccggccactcctgtacca
gtcgcacgtagtagctccgctcaaacctgcgttagtatgcgccgaacccagcttttcccc
aagtcttgctcttcatcatcatcgtcctcttctactgttttcaacgcctcaaaatcctcc
gcaaacaatggctacgctggagaaaatccagaaccctcatccaaacctctaagcaactgt
ccgctcaattctgatcagagtccaactaaagaacattttagcaaaaatgtgaaacgctct
ccaggataccagacaccacttcaccttctcagactgtcccagatcccatctaaacgactg
tctgatggatcccacgctgggtttattaatggacatccatcccagagtgtccggcagccc
gccagtagcaccccacttcattcagactcttccctacaaaggcaaaccttgtctgttggt
caacaagcctcgctgtctctacaactcagtcattctgaaagttatcaatcccttgcaaaa
ctccagagaagacgcgaaataacagttatcttcagcatgggtcctttaatctcccaccaa
actctccaagccatcatcatcctgaaagtcaagagagaatgcgccagaacaaatggagtc
ggagatgaggttcaaaaccacagtgttgaagaagtgaacgttgaggagatatctccccaa
gctagtttttgtgtcatggatgagcctcctataccatttgatgactcgtggggtttggat
ggaaatgtgggaagccagaaaccttgctttagtctaagactggacagcagtgaagggaca
gtcagtccagcgcgtactgagagtaggagaccggaggcaagcacacgcaccaagtctcct
gcagctggagctcaaatgaaaactcccgagccatcacctggtccatttaatcacagttta
cctgatcctgacatgtgggatgactgggaggagaaagaggaggaactacttccactttca
cagagattagcgccaccttctgcaaagagagtcgctgcactaaaaaccccagtggcttgt
cgaaatagaaatgaagcacctttgatacccatcactccaatgccaggcttctctgacatg
gacacacctgagctgaaaaacagactcaaccggtttggtgtgcgtcctctgcccaagaag
catatggttctgaagctgaaggagatccatcaatacacacaccagctccagagctctgaa
tctgaagaggagacctgtccccccctgcatgcctccaaatcccagtcagcacaactgtcc
tttaagcagcctacagcgccccctgctgtctcctcggcaaaaccgcaagctagtgacgaa
gacgagcttttatcagcctctcagaactctaccacctcttccactgcagagtcagacagg
tcaaatccggagctgtgcgtatccgaaggcgatgactctgacagtgagggaatcacctcg
tctcaggctgttgtgcgtgagaaggacaaacttctcgcagttcgacggtttatcttgtct
gatccaaaactgcacggacgggtgctgcagtaccagcctattccactggtggagctgcag
gccagcttgaaagcagcaggaatcaggttgggtgctccaaagctgctggattttttggac
tcacagtgtattaccttcagtacggccaaacagggtcaaaatacttcttcacgcaggaag
cagaaacgtaaagttgggaccagtgggcctggagatgcagctgtgaatagaaggaaaaaa
gcagcaaagcccaataaggccataagtgttgcttga
DBGET
integrated database retrieval system
