Triplophysa dalaica: 130431135
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Entry
130431135 CDS
T09616
Symbol
prkn
Name
(RefSeq) E3 ubiquitin-protein ligase parkin isoform X1
KO
K04556
parkin [EC:
2.3.2.31
]
Organism
tdw
Triplophysa dalaica
Pathway
tdw04120
Ubiquitin mediated proteolysis
tdw04137
Mitophagy - animal
tdw04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
tdw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
130431135 (prkn)
04120 Ubiquitin mediated proteolysis
130431135 (prkn)
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
130431135 (prkn)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tdw04131
]
130431135 (prkn)
04121 Ubiquitin system [BR:
tdw04121
]
130431135 (prkn)
03029 Mitochondrial biogenesis [BR:
tdw03029
]
130431135 (prkn)
Enzymes [BR:
tdw01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.31 RBR-type E3 ubiquitin transferase
130431135 (prkn)
Membrane trafficking [BR:
tdw04131
]
Autophagy
Mitophagy
PINK1-Parkin associated proteins
130431135 (prkn)
Aggrephagy
Other aggrephagy associated proteins
130431135 (prkn)
Xenophagy
Other xenophagy associated proteins
130431135 (prkn)
Ubiquitin system [BR:
tdw04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
RBR proteins
130431135 (prkn)
Mitochondrial biogenesis [BR:
tdw03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-dependent mechanism factors
130431135 (prkn)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ubiquitin
zf-RING_12
Rad60-SLD
Rad60-SLD_2
Dsc3_N
Motif
Other DBs
NCBI-GeneID:
130431135
NCBI-ProteinID:
XP_056615965
LinkDB
All DBs
Position
11:complement(18004612..18103989)
Genome browser
AA seq
511 aa
AA seq
DB search
MIVYVRFNSSHGFPVELEQVASVAELKETVGRLQGVEPDQLRVIFAGRELCSESTLQSCD
LPEQSTVHVVLPPSSSARRSEVVLQRRLGGGVGSLTRLDLSSSRLTTASEGLAVILETDA
SGQRNQDGHKESRSHSSFHVFCKTICKAIQPGKLRVRCRDCKQGTLTLNRVTAGCSSCPD
LMAELRMGSGETKKLFAMDFLSTARHSAFAEAELKVIFNSCLDEPFEPAEMRRLRSLGFI
DQLQIAMDRKESRELSMAKSSAGLAMIPKDQALQIGVMGLSPQSASSPPSTSLRGQRQRR
ESWDSPSDSFSTEPTVPAAVSLPSAPLPVGRSRKKKPRRGVPSSPAQVPSPEVPSPEVPS
PEVPSTEVFSPKVQSPVASSPKFFLGGAPWGCDGPSGQPGCGFSPATGTKPGPATGTKPG
PATGTKPGPATGTKPGPATGTKPGPAAGVKPCPFWTSPCLFLFAPTPLQCLLFLLSHLNP
FIVLACLPLVLFSLFCLVLSLSQSALSCSCL
NT seq
1536 nt
NT seq
+upstream
nt +downstream
nt
atgatcgtatatgtgcggtttaattccagccatgggttcccggtggagttggagcaggtt
gcaagtgtcgctgagctaaaagagaccgtggggcgtctacagggcgtagagccggatcaa
ctgcgggtcatttttgctggacgagagctctgcagtgaatccacacttcagagctgtgat
ctccctgagcagagcacagttcatgtggttctgcctccgtccagttcagcccggcgctct
gaggtggtcttacagcgccggctgggtggcggggtgggcagcttgacccgactggacctc
agcagctctcgtctgaccactgcatccgaaggtctggctgtcattttggagacagacgcc
tccggtcagaggaatcaagatgggcacaaagaatccagatcccatagcagtttccatgtc
ttctgtaagacgatctgcaaggcaatccagcctggaaaactacgggttcgctgtagagac
tgtaagcaaggcaccctcacactcaaccgggttaccgcaggatgcagttcatgcccagac
ctgatggcagagctgagaatgggaagcggtgagactaaaaagctcttcgccatggacttc
ctctccactgcacgccactcggccttcgccgaggcagagttgaaggtcattttcaacagc
tgcctcgacgaaccctttgaacctgcggagatgcgcaggttgaggtccctgggcttcata
gatcagctccagattgcgatggatcgcaaggaatccagggaattgtccatggcgaagtct
tcagcagggctggccatgattccgaaagaccaggccctgcaaatcggggtcatgggtctc
tccccacagtctgcgtcctctccaccatccaccagtctccgtggacagcgccaacggagg
gagtcgtgggactccccgtccgattccttcagcacggagcctaccgtgcctgccgctgtc
tctctaccgtcggccccactccccgtgggccggtccaggaagaagaagccaaggagggga
gtgccgtccagtcctgcccaggtcccgagtccggaggtgccgagtccggaggtgccgagt
ccggaggtcccgagtacggaggtctttagccccaaggtccagagtccggtggcgtcaagc
cccaaattttttttggggggggcgccgtggggatgtgacggtccgagcggccagcccggc
tgcggattctccccagcaaccggcaccaagcccggtccagcaaccggcaccaagcccggt
ccagcaaccggcaccaagcccggtccagcaaccggcaccaagcccggtccagcaaccggc
accaagcccggtccagcagccggcgtcaagccctgtccattctggacttccccctgttta
ttcttgtttgcccccacccccctccaatgtctgttatttttattgtcccacctgaacccg
tttattgttcttgcctgtctgcccctagtcttgttttccttgttttgtttagtcttgtct
ttgtcccagtctgccttgtcttgttcgtgcctttga
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