Triplophysa dalaica: 130431340
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Entry
130431340 CDS
T09616
Symbol
col13a1
Name
(RefSeq) collagen alpha-1(XIII) chain isoform X1
KO
K16617
collagen type XIII alpha
Organism
tdw
Triplophysa dalaica
Brite
KEGG Orthology (KO) [BR:
tdw00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
tdw00536
]
130431340 (col13a1)
Glycosaminoglycan binding proteins [BR:
tdw00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
130431340 (col13a1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
130431340
NCBI-ProteinID:
XP_056616282
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All DBs
Position
11:16697114..16782817
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AA seq
662 aa
AA seq
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MEEMKSRVSLPSSQGRTCVEHPCQKRLWTNRKDLCGIFVCIALCLISFGFCVLLYLKTSE
LQTRVLSLENERDPRVSSWISVEQVEPVLWSRLDKILDEKLAARLPKVRTARDAPHSCLC
PPGPPGPPGRAGFPGAPGEPGLSIIGPRGPPGQPGTRGFPGFPGPIGLDGKPGQNGPKGD
MGARGPKGVPGEPGPKGEKGVCGDYTHRKRRIVNTCVGGHATQGETGAQGPPGPPGPPGN
PGPTGTSGSPGKPGEPGKPGKDPRMLPGLKGEPGVSGQKGDRGEVGPSGPEGPKGHKGDQ
GLKGEKGEPSAAGNGIKGEPGVSGLPGPVGPKGEKGDNGIKGEPGLEGPSGPRGPPGPTG
EPGKTLINENDIRNVHSMGPPGLPGPPGAAGTPGLKGDIGLPGAPGHDGEKGPRGKPGET
GPVGPPGPEGPRGEGGVMGFSGPKGDKGDMGPSGSPGLDGPTGEKGVSGPPGPIGLPGPM
GQKGELGEKGDKAELVYGPAGPPGPAGPVGPLGPPGLLGPKGEPGVGLRGDKGSHGQKGD
KGDRGHLGLPGAHGLDGKPGPVGLIGPAGVSGPAGPKGEMGEKGDMGVAGPIGPQGIPGL
VGPAGLKGNRGERGKKGNRGAKGDKGDQGAPGLDAPCPLGDDGLPVPGCWNKGQNPFQLA
KK
NT seq
1989 nt
NT seq
+upstream
nt +downstream
nt
atggaggagatgaagtcgagagtatcgctgccgtccagtcaagggaggacttgcgttgag
catccttgccaaaagcgcctttggacaaaccgcaaggacctttgcggtatattcgtgtgc
atcgccctgtgtttgatctcgtttggattttgcgttttgctttacctgaagacgtcggaa
ctccagactagggtactcagtttggaaaatgaaagagatccaagggtctccagttggatc
tctgtcgaacaggtggagcccgtcctctggagtcgactagataagattttagatgagaaa
ttagcagcacgtctaccgaaggtccggacggcccgggacgcaccccacagctgtctctgt
cctccaggacctccaggtccacctggacgagctggctttccgggagcaccaggggagccg
ggtctgtctatcattggcccaagaggacctcctggacagcctggtactagaggatttcca
ggttttccgggtcccattggcttagacgggaaacctggacagaatggtccaaagggagat
atgggtgctcgtggtcctaaaggagttccaggtgaacctggtccaaaaggagagaagggt
gtgtgtggtgactatactcacaggaaacgccgtattgtcaacacctgtgttggaggacat
gccacacagggcgagactggagcacagggaccaccggggcctcctggccccccaggaaat
cctggacctacaggcactagtggatcccctggtaaacctggagaacccggcaaacctgga
aaggacccaaggatgctaccagggctgaagggtgagcctggtgtatctggacaaaagggt
gatcgtggtgaggtgggtccaagtggacctgaaggcccgaagggtcataaaggagatcaa
ggccttaagggagagaaaggtgaacccagtgctgcaggaaatggcatcaaaggagaacca
ggtgtctcaggactgccaggaccagttggacccaagggtgagaaaggcgataatggcata
aagggtgaacctggtctggaaggtccctctggaccaaggggtccacccggtcctacaggc
gagccaggaaagactttgatcaatgagaatgatattcgtaatgtgcattcaatgggacct
cctggtctaccaggacctccaggggctgctggcactccaggtttgaagggtgatattgga
ctgccaggtgcccctggtcatgatggcgaaaagggtccacggggaaagccaggagaaaca
ggacccgtcggcccacctggaccagaggggccacgaggagagggaggagttatgggcttc
tctggaccaaaaggagacaagggggacatgggcccttctggatcacccggtttagatggc
cctacaggagaaaagggggtttcagggccccctggtcccattggattgccaggcccaatg
ggtcagaaaggtgaacttggagagaaaggagacaaagcagagttggtctacgggcctgct
gggcctccaggacctgctgggccagttgggccattggggcctccaggtttgttaggacca
aagggagagccaggagttggtttgagaggagacaagggatcacatggacaaaagggagat
aaaggagacagaggccatctcggactccctggggctcatggtttagacggcaagcctggt
ccagtgggtctgataggaccagctggggtttctgggcctgcaggaccaaaaggagaaatg
ggggaaaagggagatatgggagtagcaggaccaatagggcctcaaggcatccctggttta
gtaggaccagcgggattaaaaggaaaccggggggagaggggcaagaagggcaacaggggg
gccaaaggggataagggagaccagggagccccaggattagatgccccgtgtccgttgggc
gatgatggtctgccagtaccagggtgttggaataaaggtcagaatccgttccagcttgcc
aagaagtaa
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