Triplophysa dalaica: 130432873
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Entry
130432873 CDS
T09616
Symbol
smg5
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG5
KO
K11125
protein SMG5
Organism
tdw
Triplophysa dalaica
Pathway
tdw03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tdw00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
130432873 (smg5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tdw03019
]
130432873 (smg5)
03032 DNA replication proteins [BR:
tdw03032
]
130432873 (smg5)
Messenger RNA biogenesis [BR:
tdw03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
130432873 (smg5)
mRNA cycle factors
Common to processing body (P body) and stress granule
130432873 (smg5)
DNA replication proteins [BR:
tdw03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (animals)
130432873 (smg5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
PIN_4
Motif
Other DBs
NCBI-GeneID:
130432873
NCBI-ProteinID:
XP_056618422
LinkDB
All DBs
Position
12:19676612..19694075
Genome browser
AA seq
1092 aa
AA seq
DB search
MSGPSQDSEPEAKVLHIKRLYRAVVETVHKLDVIISSKSSYREVFKPENISLRNKLRELC
VKLMFLHPVDYGRKAEELLWRKVYYEVIQVIKTNKKHIHSRSTLECAYRTHLIAGVGFFQ
HLLLYIQSHYQLELQDCIDWTHVTDPLIVRKKPVSATPKEMEWAQMACHRCLVYLGDLAR
YQNELAGVEAEQLAERFYHQALSVAPHVGMPFNQLGTLAGSKFYNVEATYYYLRCIQSET
PFDGAYGNLKRLFDKAAKMYHQVKKQDMKKLSPSRQRSKDIKRLLVSFMYLQSLLQPKNS
LMETELTSLCQSVLEDFNLVLFYLPLPAHGSQSASEEEEEHDSICSVLPDSLIFKMVVTC
LMVVHSLKRGASKQYSASIAFTLALFSHLVNHVNIRLQAELDEGESGVPPLRTDNTDEPE
ARDPSSATPSEDRTLQNGSLEDEEEFEDEVKENEDKPTGNGRKVEVTKGVEKKRSPEEKQ
KQKRKFSRLSMLRRRRCAHKEDESDLSEGFESDEEEDEEDGVPVDSLGSSKVQMNSLGRE
GRRETSAVDGRWESGSEEDEGGTAFDVETDSDMNSQESRSDLEDIEDAENAPQHQQEEHE
QPKQSREENSTPPATNGPLVSNDASISSNLQAMSSQLFQSKRCFRLAPTFSNVLLRPPAT
TNPTPDSNPKPSQDTTPPPETTSTTRPELVNGTNDNNAESDSEGSEHSNQSIRSEKTLSE
RLEILTNQGLIQIVKVFLDWLRTNTDIIVMCAQSSQSLWNRLSVLLNLLPDGNKVLEADL
VLNKEVTKLLNESERPGLVQTLLLPEDLALRHLPALSSAHRRLDFTGQRPSLSPLEECVV
RLCCIRSFGHFLTNLQGNVLHFNPEAGIFTSISQSEQENLVQQAKAQFRMAEEEARRNRL
MRDMAQLRLQLEVSQLEGSLQQPKAQSSMSPYLVPDTAALCQHLGLLRQLAASGCFIIII
PRTVIDGLDMLKKENAGARDSIRFLEAEFRKGNRYIRCQKESGRSFERDKLKRQDVEAWH
LYKMVDSCRQLTGSQNNGDEDTAGMVTILTGHSVKEMTERSDPMKAAVQAVGTAGMELKN
ITEFYKQWKEMG
NT seq
3279 nt
NT seq
+upstream
nt +downstream
nt
atgagcggaccgagtcaggacagcgaacccgaggccaaggtgcttcatattaaacgtctt
tacagggctgtggtggaaacagtgcacaagctggatgtcataatcagcagtaaatcatca
tatagggaggtgttcaaacctgagaacatcagcttaaggaacaaattacgggaactttgc
gtgaagctgatgttcctgcatcctgtagactatgggcgcaaggcagaagaactgctgtgg
aggaaggtctactatgaagtcatacaggtcattaaaaccaacaagaagcatattcacagt
cgcagcactctggagtgcgcctacaggacacatctgattgctggggtgggcttttttcaa
cacctgctgctctacatccagtcacactatcagctggagctacaggactgcatcgattgg
acgcacgtcactgacccacttattgtgcgtaagaaacctgtctcagccacccctaaagag
atggagtgggcccagatggcatgtcacaggtgccttgtgtacttgggagatcttgcacgg
taccagaacgaactggctggagtggaagctgagcagctggccgagcgcttttatcaccag
gccctgtctgttgctcctcatgtcggaatgccatttaatcagttgggtacgctggctgga
agtaaattttataacgttgaagctacttactactacctgcgctgtattcagtctgagact
ccctttgatggggcctatgggaatttaaagcgtctttttgacaaggcagccaagatgtac
catcaggtgaagaaacaagacatgaagaaactgtcaccatcacgtcagaggtcaaaagac
atcaagagactgcttgtgagcttcatgtatttgcaaagtctgctgcagcccaagaacagt
ctgatggagacggagctgacgtcactgtgccagtctgtgctagaggactttaatctggtg
ctgttctacctgccacttcctgctcacgggagccagtcggccagcgaggaggaggaggag
cacgactcaatctgctctgtgcttcctgacagcctcatattcaagatggtggtgacttgc
cttatggtggtgcacagcttgaagagaggagcctcgaagcagtacagtgcctccatcgcc
ttcacattggctctgttttcacatctggtcaatcacgtaaacatacgactgcaagctgaa
ctggatgagggcgagagtggcgtcccacccctgcgcacggataacacggatgagcctgag
gcaagagatcccagcagcgcgacaccatctgaagacagaaccctgcagaacggctccctg
gaggatgaagaagagtttgaagatgaggtgaaagaaaatgaagacaagcctaccgggaac
ggaaggaaggtggaagtcacgaaaggagtggagaagaagaggtcaccggaggagaagcaa
aaacagaagaggaagttctcgcgtctttccatgctccgccgccgccgatgcgctcacaag
gaggatgagagcgacctgagcgaaggctttgagagtgatgaagaggaggacgaggaggat
ggtgtgccagtggacagtctgggatcatccaaggtccagatgaactctttagggagggaa
ggacgaagggaaacgtctgcagtggatggcaggtgggaaagcggttcggaggaggacgaa
ggaggcacggcctttgacgtcgagacggattctgacatgaacagtcaggaatctcgctcg
gacctggaagacatagaagatgcggaaaatgcgccgcaacatcagcaagaggaacatgag
cagccaaaacaatctagagaggagaactcgaccccgccagcaaccaatggccctctagtg
tctaatgatgccagcatcagcagtaaccttcaggccatgtcttcccagcttttccagtcc
aaacgctgcttccggcttgctcccacattcagcaatgtgctactccgccccccagctacc
actaaccccaccccagactccaaccccaaaccttcccaagataccacaccccctcctgaa
accacttccactacgagaccagagcttgttaacggaaccaatgataataatgctgaatct
gattcggagggcagcgaacacagcaaccagtcgattcgcagtgagaaaaccctttctgag
cggcttgagattctgaccaatcagggtcttattcagatagtcaaggtctttttggattgg
ctgaggacaaacactgacatcatcgtgatgtgcgcacagagttctcagagcttgtggaac
agactctcagtcctgcttaacttactaccagacggaaacaaggtgttggaagcagatctt
gttcttaataaggaggtgaccaaactcctgaatgagtccgagcggcccggattggtccag
acgctgctgttgcccgaggatctggcactccgccaccttcctgcgctcagctcggcccat
cgacgtctggatttcacaggccagagaccttctcttagccctctggaagagtgtgtggtg
cgcttgtgctgtattcgcagctttggacacttcctcactaatctccaaggcaacgtgttg
cacttcaaccctgaggcgggcatcttcaccagcatcagccaatcagagcaggagaacctt
gttcaacaggccaaggcccagttccgcatggcagaagaggaagctcgtagaaaccggctc
atgagagacatggcccagctgcgcctgcagttggaagtctctcagttggaaggaagcctg
cagcagcccaaagcccagtcctccatgtctccatacctggtgccagacaccgccgctctg
tgccagcacctgggtctgctcagacagctggctgccagcggctgcttcatcatcatcatt
cctcgcacagtaattgacggtctggacatgctaaagaaagagaatgctggagcgagagat
agcatccgtttcctggaggcagagtttcggaagggaaacaggtacatccgctgtcagaaa
gagtcgggaagaagttttgagagggataaattaaagcgacaggatgtagaagcctggcac
ctgtataagatggtggacagctgtcgacagctcacaggatctcagaacaacggagacgaa
gacacggcagggatggtgaccattttgacgggacactcggtgaaggagatgactgaaaga
tcagatcctatgaaggcggctgtccaggcggtgggtaccgcaggcatggagctgaagaac
atcacagagttctataagcagtggaaggaaatgggttga
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