Triplophysa dalaica: 130434087
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Entry
130434087 CDS
T09616
Symbol
fdft1
Name
(RefSeq) squalene synthase isoform X1
KO
K00801
farnesyl-diphosphate farnesyltransferase [EC:
2.5.1.21
]
Organism
tdw
Triplophysa dalaica
Pathway
tdw00100
Steroid biosynthesis
tdw01100
Metabolic pathways
Module
tdw_M00101
Cholesterol biosynthesis, FPP => cholesterol
Brite
KEGG Orthology (KO) [BR:
tdw00001
]
09100 Metabolism
09103 Lipid metabolism
00100 Steroid biosynthesis
130434087 (fdft1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01006 Prenyltransferases [BR:
tdw01006
]
130434087 (fdft1)
Enzymes [BR:
tdw01000
]
2. Transferases
2.5 Transferring alkyl or aryl groups, other than methyl groups
2.5.1 Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
2.5.1.21 squalene synthase
130434087 (fdft1)
Prenyltransferases [BR:
tdw01006
]
Terpene biosynthesis
Squalene/phytoene synthase
130434087 (fdft1)
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
SQS_PSY
GST_C_8
Motif
Other DBs
NCBI-GeneID:
130434087
NCBI-ProteinID:
XP_056619964
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All DBs
Position
13:22855632..22863128
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AA seq
448 aa
AA seq
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MAGVCGKSAASLSVLKRSFSLRASPRSVLAGGRRSAQEGRLVSLPPHPFRAHRHPAYVCF
SCQDSMSDTLRTCYAYLNQTSRSFAAVIQALDGELRHAVCIFYLVLRALDTVEDDMSIPL
EQKVPLLHDFHTFLYQPDWCFTESKEKDRRVLEDFPTISVEFRNLGPEYQDVISDICHRM
GVGMADFLEKKVGSMKEWDWYCHYVAGLVGIGLSRLFSASQLEDPEVGRDTELANSMGLF
LQKTNIIRDYLEDQREGRAFWPQEAWSQFTSRLEDFAHPQNLSSALSCLNLLVTDALRHV
PDVIAYLSRLRNQSVFNFCAIPQVMAIATLSACYNNPQVFQGVVKIRKGQAVTLMMQATN
MSAVQSIMAQHTQEILQKVSMTDPSREKTLCILTVIREKSLSPAALSLRAHHLSPVYVSA
AMLLAALSWQYLNATAGQPPGGADMHGH
NT seq
1347 nt
NT seq
+upstream
nt +downstream
nt
atggccggagtttgtggcaaaagcgccgcgtcgctctcggtgctcaagcgctcgttctcg
ctgcgcgcttccccgcgctcggtgctcgccggcgggcggcgaagcgcgcaggaagggagg
ctggtgagtcttcctccacacccgttcagggctcaccgacaccccgcgtatgtgtgtttc
tcctgtcaggactccatgagtgacaccctgcggacctgctacgcgtatctgaaccagacg
agccggagcttcgcggcggtgatccaggcgctggacggagagttacgacatgcagtgtgt
atattttatctggttctgcgagccctggacaccgtagaagatgacatgagcatcccgctg
gagcagaaggttccgttactgcacgacttccacacgtttctgtatcagcccgactggtgc
ttcaccgagagcaaagagaaggacagacgcgtgctggaggatttccccacgatttctgtg
gagttcaggaatctgggaccggagtatcaggacgtgatctcagatatctgtcaccggatg
ggagtgggcatggcagactttctggagaagaaagtgggatccatgaaggagtgggactgg
tactgtcattatgtggcgggtctggtcgggatcggattgtctcgactcttctcggcgtct
cagctggaggatcctgaggtgggacgggacacagaactggctaactccatgggtctgttc
cttcagaagaccaacatcatcagagattatctggaggaccagcgagagggacgagctttc
tggcctcaggaggcctggagtcagttcacatcacgtctggaagatttcgctcatcctcag
aacctgagctccgccctttcctgtctgaacctgctggtgacagatgcgctccgtcacgtc
cctgatgtcatcgcgtatctgtcccgacttcgcaaccagagcgtctttaacttctgtgcc
attcctcaggtgatggcgatagcgactctttcagcatgttacaacaatcctcaggtgttt
cagggtgtggtgaagatccgtaagggtcaggctgtgactctcatgatgcaggccacaaac
atgagcgctgtacagagtattatggcacagcacactcaagagattctgcagaaagtgtcc
atgacagatccctctcgagagaagacgctgtgtatcctgactgtgatcagagagaagagt
ttgtctcctgccgctctgtccttgagagcacatcacctgtcgcccgtctacgtgtcggcg
gccatgctgctggcggctctcagctggcagtatctcaatgccaccgcgggtcagccacca
gggggtgcagacatgcatggacactga
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