Triplophysa dalaica: 130434397
Help
Entry
130434397 CDS
T09616
Symbol
cpsf3
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 3
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
tdw
Triplophysa dalaica
Pathway
tdw03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tdw00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
130434397 (cpsf3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tdw03021
]
130434397 (cpsf3)
03019 Messenger RNA biogenesis [BR:
tdw03019
]
130434397 (cpsf3)
Transcription machinery [BR:
tdw03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
130434397 (cpsf3)
Messenger RNA biogenesis [BR:
tdw03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
130434397 (cpsf3)
U7-dependent histone pre-mRNA processing factors
130434397 (cpsf3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B_6
Lactamase_B
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
Lactamase_B_3
PAP-OAS1
Beta_lactamase3
Gp58
Motif
Other DBs
NCBI-GeneID:
130434397
NCBI-ProteinID:
XP_056620519
LinkDB
All DBs
Position
13:complement(14250500..14255213)
Genome browser
AA seq
690 aa
AA seq
DB search
MAAKRKADVPVPAEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDAL
PYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKV
SNISADDMLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVK
ILYTGDFSRQEDRHLMAAEIPSVKPDILITESTYGTHIHEKREEREARFCNTVHDIVNRE
GRCLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKI
RKAININNPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVI
IAGYCVEGTLAKHIMSEPEEIATMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPH
VILVHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTLNFRGEKLAKVMGSLADK
KCAQGQRVSGILVKKNFSYHILSPSDLSNYTDLAMSTIKQTQAIPFTGPFELLLSQLRHL
TGDVDEIDTPEKNTLRVFNNITLVYDSNMVMLEWLANPLNDMYADAVTTVVLEVQSNPKA
QKDVQPQEKKVDVNVFQSRILKMFQDMFGEECVDLSDNNSLSITVDGKTACVNLETRTVE
YEETNGEDDSLREMVELAVQRLYEAMNPAM
NT seq
2073 nt
NT seq
+upstream
nt +downstream
nt
atggctgcaaaacgtaaagcggatgtaccagtgcctgcagaagagagtgatcaacttctc
ataagaccattaggagctggtcaggaggtgggcagatcatgcattatcctggagtttaag
ggacgtaaaattatgctcgactgtgggatccaccccggtttggagggcatggatgcattg
ccctacattgatttgatagacccagctgagatagacctgctcctcatcagccattttcac
ttggatcattgtggagcgttaccttggttcttacaaaagacaagtttcaaagggaggact
tttatgacccatgccaccaaagccatctaccgctggttgctttcagactatgtgaaagtt
agcaacatctcagcagatgatatgctgtatacagagacagatctagaagaaagcatggat
aagattgagacgatcaacttccatgaagtgaaagaggtggctgggattaagttttggtgc
taccatgctggtcatgttttgggtgccgcaatgtttatgatcgagattgctggagtgaag
attctgtatacaggagatttctcacgtcaggaagacagacatctaatggcagctgagatt
ccaagcgtcaaaccagacattctcatcacagagtcaacgtatggcacacacatccatgag
aaaagagaagagagagaagcgcgtttctgtaacacggtccatgacatagttaaccgagag
ggacgctgtctgatcccagtgttcgctttgggtcgagcccaagagctgctgctcattctc
gatgaatattggcagaatcaccctgaactgcacgacattccaatttattatgcctcgtcc
ctggcgaagaagtgcatggctgtataccagacttacgtgaacgccatgaacgacaagatc
cgcaaggccatcaacattaacaacccttttgtcttcaagcatatcagcaatcttaagagc
atggaccattttgatgacatcggcccgagtgtggtgatggcatctccaggtatgatgcag
agcgggctctccagagagctttttgagagctggtgcacggacaagaggaacggcgtcatc
atagcaggttactgtgtggaaggaacactcgccaagcatatcatgtctgaaccagaggaa
attgccaccatgtccggccagaaactgccattgaagatgtctgtggactacatctcgttc
tccgctcacactgactaccagcagaccagcgagttcatccgagctctgaaacctcctcat
gtgattttagttcatggagagcagaatgagatggctcgtctgaaagctgcgctgatcaga
gagtacgaggacaacgatgaggttcacatcgaggtccacaaccctcgtaacacagaggcc
gtcacgttaaacttcagaggagaaaaactggcaaaggtgatgggttctcttgcggataag
aagtgtgcgcagggtcagagggtctccggcattctggtcaaaaagaacttcagttatcac
atcctctccccatctgacctttccaattacacagatcttgctatgagcaccattaaacag
actcaagccatccccttcaccggcccttttgaactgctgttgagtcagctacgtcacttg
acaggtgatgtggatgagatcgatactccagagaaaaacacactgagggtgtttaacaac
atcacactggtttatgattcaaacatggtcatgctggagtggcttgccaaccccttaaat
gacatgtatgctgatgcagtcaccacagtggtgttggaggtccaatcaaatcctaaagca
cagaaagatgttcagcctcaagaaaagaaggtggatgtgaatgttttccagagcagaata
ctgaaaatgttccaagacatgtttggtgaggaatgtgtcgacttaagcgataataacagt
ctgtctataaccgtggatgggaagactgcctgcgtgaacctggaaaccagaactgtggag
tatgaagagaccaacggtgaagatgattctctaagggaaatggtggagcttgctgtgcag
agactgtatgaagcgatgaaccctgcgatgtga
DBGET
integrated database retrieval system
