Triplophysa dalaica: 130435442
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Entry
130435442 CDS
T09616
Symbol
ighmbp2
Name
(RefSeq) DNA-binding protein SMUBP-2 isoform X1
KO
K19036
ATP-dependent RNA/DNA helicase IGHMBP2 [EC:
5.6.2.5
5.6.2.3
]
Organism
tdw
Triplophysa dalaica
Brite
KEGG Orthology (KO) [BR:
tdw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
tdw03009
]
130435442 (ighmbp2)
03012 Translation factors [BR:
tdw03012
]
130435442 (ighmbp2)
Enzymes [BR:
tdw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
130435442 (ighmbp2)
5.6.2.5 RNA 5'-3' helicase
130435442 (ighmbp2)
Ribosome biogenesis [BR:
tdw03009
]
Eukaryotic type
Other ribosome biogenesis factors
130435442 (ighmbp2)
Translation factors [BR:
tdw03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
130435442 (ighmbp2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_11
AAA_12
SMUBP-2_HCS1_1B
R3H
AAA_19
AAA_30
Viral_helicase1
zf-AN1
ResIII
DEAD
Helicase_RecD
AAA_22
nSTAND3
UvrD-helicase
AAA_16
Flavi_DEAD
PhoH
NPHP3_N
AAA
SRP54
Herpes_ori_bp
IstB_IS21
AAA_7
cobW
AAA_25
UvrD_C_2
ABC_tran
SLFN-g3_helicase
AAA_33
Motif
Other DBs
NCBI-GeneID:
130435442
NCBI-ProteinID:
XP_056622072
LinkDB
All DBs
Position
14:complement(8156786..8165623)
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AA seq
1003 aa
AA seq
DB search
MEVEEFVSKTLELLQEEREAEVEEARAWQENVSLKTLQQKGVCLLKLQVASQHTGMYGRL
LVIFEPRKIIGPSVLPSNTFGPGDIIGLYQSEGQSQPSQLGSGVVTRITQTSLTVAFDDT
QDGINFDRGGLYNLMKLANDVTYKRLIKALKSLNSYSGGPASHLISVLFGYSEPGTISHQ
RALEFNNTGLDHSQKEAVAFAISQKDVAIIHGPPGTGKTTTVVEVILQAVKQEQKVLCCA
PSNVAVDNLVERLVRSKVKVLRLGHPARLLESIQKHSLDAVLAHSDNTNIIADIRKDMDK
ALSEMRKGRDKGQRSNVKREIGELRRELRSREETAITQILKRADVILATNTGAADNGPLK
HLPNDHFDMVVIDECAQALESSCWIALLKARKCILAGDYKQLPPTIKSQSAASKGLSVSL
MERLIKKYGDSVVRMLTTQYRMNSAIMQWASEQMYEGKLIAHQSVEKHLLRDLVGVADVE
DTRIPLLLIDTAGCGLSEMENTDEQSKGNQGEVDIVALHIKALTGAGLQVKDIAVIAPYN
LQVDLLREKLSHKHAELEIKSVDGFQGREKEAVVLSLVRSNRRGEVGFLAEDRRINVAVT
RARRQLTVVCDSQTVRNHDFLKSLVDYITEHGEVRTAFEYLEDCVPQNYTRESKDKQLGI
KDASSTKQKSKNQGKKPEQEHKKNANKSKGEGQNNARSGQQNQASNSHHPEPRDAEQTQI
KRQEIKEQILDFLKDQNKTELQFSSFLNSHERLLVHEISEELGLKHESHGVGKNRHVTVS
RTQASSENPEKEPETQPTEVTASSAGVLDGEKSEKPSQSAVDLKSLHMERMRREMEKREE
RKQQKQQSVKLESNLNASKSQSVKKSKGTTKGSTKMKAGAVDIAAAAAGDDDFDALIDAV
VKAESVCGFVKCKASVLTLGQLCIYCNRQYCLSHHIPEVHGCGDEAKSHARMRISKEGVL
YAGSGQKDKSMDPNKKAHLQRKLDSKLKGMASHRKTKAKDKEQ
NT seq
3012 nt
NT seq
+upstream
nt +downstream
nt
atggaggttgaagaatttgtttccaagacacttgagctcctgcaagaggagagagaagcg
gaggtagaagaagcacgggcatggcaggagaacgtatctctcaaaaccttacagcagaag
ggagtgtgcctgctgaaacttcaggtcgcaagccagcacactggcatgtatgggaggctt
ttagtcatttttgaacccagaaaaattataggaccctcagttcttcccagcaacacattt
ggacctggggacattattggtttgtatcaatcagaaggtcagagtcagccatctcagttg
ggttcaggagtggtgacacgcatcactcagacatccttgacagtggcttttgatgacaca
caagatggtatcaactttgaccgaggtggactttacaatttgatgaagctggcgaatgat
gtcacgtacaagcggctcataaaggccttaaagtctttaaattcatacagtggtggtcct
gcatctcacctgatcagtgtcttatttggttattcagaaccagggacaatatcacatcaa
cgtgcattggaatttaacaacacagggttagatcattctcagaaggaggctgtagcattt
gcaatttctcagaaagatgtcgcaatcatacatggaccaccagggactggcaaaaccacg
acagtggttgaagttatcctacaggcagtaaaacaagaacaaaaggtcctttgctgtgcc
ccatctaacgtggctgttgataacttggtggagcgtctggtgagaagcaaagtcaaagtt
ttaagattgggtcatccagcccgcctgcttgagtctattcagaaacactcactggatgcc
gtgcttgcgcacagtgacaacaccaacatcatcgctgatattcgcaaggacatggacaaa
gctttgagtgaaatgaggaagggccgtgacaagggccagcgaagcaacgtgaaacgagaa
atcggggagctgcgtcgagagctccggtctagagaggaaacggcgatcactcagatcctg
aagagagcggatgttattttagcaactaacactggagccgctgataatggtcctctgaaa
catcttcctaatgatcattttgacatggtggtgatagatgagtgtgctcaggcgttagag
agcagctgctggatcgctcttctcaaagcacgcaagtgcatactggccggggattacaag
cagctgccacccaccatcaaatcacagagcgcagcatctaaaggcctgtctgtgagttta
atggaacgtctgattaagaaatatggagattcagtggtccgaatgttgaccactcagtat
cggatgaacagcgccatcatgcagtgggcttcagagcagatgtatgagggcaaacttatc
gcacaccagtcagtggagaaacacttgcttagagacctggttggggttgctgatgttgaa
gacaccagaatccctcttttgcttattgacacagcaggttgtggccttagtgagatggaa
aatacggatgagcagtccaaagggaatcaaggagaagtagacattgtggctcttcatata
aaagctcttactggggctggacttcaagtcaaagatatagctgttattgcaccctataat
ctccaggtggatcttttgagagagaaactgtcccataaacatgctgagctagagatcaag
tctgttgatgggttccagggccgagagaaagaggcagtggtgttgtcattggtcagatcc
aaccgtaggggtgaggttggatttcttgctgaagacagaaggatcaatgtagctgtgact
cgtgccagacggcagctcacagtagtgtgtgattctcagactgttcgaaaccatgacttc
ctcaaatccctcgttgactatattactgaacatggagaagttcggactgcgttcgagtac
ctggaagactgtgtgccacagaattacacccgtgaaagtaaagacaaacagctcggcatt
aaagatgcttcatctacaaagcagaagtccaaaaatcagggcaagaaaccagagcaagaa
cataaaaaaaatgcaaacaagagcaaaggagagggtcagaacaatgctcggtctggtcaa
caaaatcaagcttccaactcacaccatcctgaacccagagatgctgagcagacccagatt
aagagacaagagatcaaggagcagatactagacttcctaaaggatcaaaacaagacagaa
ctacaattttcttccttccttaattcccatgagcgactgctggtccacgagatctctgaa
gagctgggattaaagcatgagagtcacggagtggggaagaaccgtcatgtcactgtctcc
cggacacaggcatcatcggaaaatccagagaaagagccagagacccaaccaactgaggtg
actgcaagttctgcaggggtgctggatggagaaaaatctgagaaaccctcacagtcggcc
gttgatctgaaaagcctgcatatggagcgcatgcgtcgagagatggagaaacgcgaagag
agaaaacagcaaaaacaacagagcgtcaaactggagtcaaatctcaatgccagtaaaagc
cagtcggttaagaaatcgaaaggcacaaccaaaggaagcactaagatgaaagcaggagca
gtggatattgctgcagctgctgcaggagatgatgattttgacgctcttatcgatgctgtg
gtgaaggcagaaagcgtatgcgggtttgtcaagtgtaaagccagcgtcctcacattagga
cagctctgcatctactgtaacagacaatactgtctgagtcatcacatacctgaggttcac
ggatgtggagacgaagcaaaatctcatgctagaatgaggatcagtaaggagggggtgctg
tatgctggtagtggacagaaggacaagtcaatggacccaaataaaaaagcacacctccag
agaaaactggactccaaactcaaaggaatggcatctcacagaaaaaccaaagctaaggac
aaagaacaataa
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