Triplophysa dalaica: 130436549
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Entry
130436549 CDS
T09616
Symbol
pabpc4
Name
(RefSeq) polyadenylate-binding protein 4 isoform X1
KO
K13126
polyadenylate-binding protein
Organism
tdw
Triplophysa dalaica
Pathway
tdw03015
mRNA surveillance pathway
tdw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tdw00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
130436549 (pabpc4)
09123 Folding, sorting and degradation
03018 RNA degradation
130436549 (pabpc4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tdw03019
]
130436549 (pabpc4)
03041 Spliceosome [BR:
tdw03041
]
130436549 (pabpc4)
Messenger RNA biogenesis [BR:
tdw03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
130436549 (pabpc4)
mRNA cycle factors
Stress granule specific factors
130436549 (pabpc4)
Spliceosome [BR:
tdw03041
]
Complex C
Other components
Complex C specific factors
130436549 (pabpc4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RBD_DEAH11
RRM_7
RRM_5
RRM_10
RBD_RDR6
POP1_C
ApbA_C
DUF6262
Motif
Other DBs
NCBI-GeneID:
130436549
NCBI-ProteinID:
XP_056623268
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Position
15:complement(7656294..7665740)
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AA seq
637 aa
AA seq
DB search
MNAATAGSYPMASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNF
QQPPDAERALDTMNFDVVKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTF
SAFGNILSCKVVCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKER
EAEMGAKAKEFTNVYIKNFGDDMDDQRLKELFDKYGKTLSVKVMTDSTGKSRGFGFVSYE
KHEDANQAVEEMNGVELNGKMVFVGRAQKKMERQSELKRRFEQLKQERISRYQGVNLYIK
NLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVG
SKPLYVALAQRKEERKAHLTNQYMQRIAGMRAMPANAIINQFQPASGYFMPAVPQAQNRT
TYYAPNQLTQMRPNPRWQQQGGRGQGGYQGMPNSLRQPGPRANIRHMAPNASPQGPRGIP
TGAHRVGGTGQPMGPRPAMGVTVPRAMPPYKYANPIRNTQPQVVQPITLQQAQPAVHVQG
QEPLTASMLAAAPPQEQKQMLGERLFPLIQAMHPSLAGKITGMLLEIDNSELLHMLESHE
SLRSKVEEAVAVLQAHQAKKDATQKVVVNTVTPAATS
NT seq
1914 nt
NT seq
+upstream
nt +downstream
nt
atgaacgcagcgaccgcggggagttatccgatggcatctctttacgtaggcgacctgcac
cctgatatcacggaggctatgctgtatgagaaattcagtccggccggcccggtgctgtca
atccgcgtgtgtcgggatatgatcacccggcgctcgctgggctatgcctacgtcaacttc
cagcagcccccggacgcggaaagggctttggacacaatgaactttgatgtggtcaaagga
aaaccaatcagaatcatgtggtcacagagagatccatcactcaggaaatccggggtcgga
aacgtcttcattaagaatttggacaagtcaatcgacaacaaggccctgtatgacaccttc
tctgcctttggaaacatcctgtcctgcaaggtggtgtgcgatgagaacgggtctaagggc
tacgcctttgtgcattttgaaactcaggacgctgccgaccgtgccattgagaagatgaac
ggcatgctgctgaacgaccgcaaggtttttgtggggcgtttcaagtccaggaaggagagg
gaagcagagatgggagccaaagccaaagagttcaccaatgtttacatcaagaactttgga
gacgacatggatgatcagagactaaaggagctctttgataaatacggaaaaacattgagt
gtgaaggtcatgacagactccacagggaaatctcgtggatttggctttgtgagctacgag
aagcacgaagacgctaaccaggctgtggaagaaatgaatggcgtggagctgaacggtaaa
atggtgttcgttggccgagctcagaaaaagatggagagacaatcggagctcaagaggagg
tttgaacagctcaaacaggaaagaatcagcagataccagggtgtaaatctgtatataaag
aatctcgatgacaccattgatgatgaaaaacttcgcaaagagttctcgcctttcggctcc
attaccagtgccaaggtgatgctggaggatggcagatccaaaggttttggctttgtgtgt
ttctcctcgcctgaggaggccaccaaggcggtgacagagatgaacgggcgtattgtaggc
tccaaaccgctgtatgtggccctggcacaacgtaaagaggaacggaaagctcatctcacc
aaccagtacatgcagcgtatcgctggtatgagggccatgcctgccaacgccatcatcaac
cagttccagcctgccagcgggtactttatgccagctgtgccccaggcccagaacagaacc
acatattatgcacccaatcagctcacccagatgcgtccgaaccctcgttggcaacagcag
gggggcagaggtcagggcgggtaccagggcatgcccaactccttgcgccagccaggcccc
cgtgccaacatacggcacatggcacccaatgcctccccccaaggtccacgtggaatccca
acaggtgcacatagagtgggtggtactggccaaccaatgggtccccgcccggcaatgggg
gtgacagtcccacgtgccatgcccccatacaagtatgccaaccccataagaaacactcag
cctcaggtagtgcagccaattaccctgcaacaggctcagcctgctgtccatgtgcaaggt
caggaacccctcactgcttctatgttagcagctgctccccctcaggaacagaaacagatg
ctcggtgagcggctgtttcctctcatccaggcaatgcatccaagtctagccgggaagatc
acaggaatgctgcttgagattgacaactccgagctgttgcatatgctggaatcccatgag
tctcttcgctccaaggtggaggaagctgtcgctgtgcttcaagcccatcaggccaagaaa
gacgccacacaaaaagtggtagttaataccgtgactcctgctgcaacatcctga
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