Triplophysa dalaica: 130437174
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Entry
130437174 CDS
T09616
Symbol
parn
Name
(RefSeq) poly(A)-specific ribonuclease PARN isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
tdw
Triplophysa dalaica
Pathway
tdw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tdw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
130437174 (parn)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tdw03019
]
130437174 (parn)
Enzymes [BR:
tdw01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
130437174 (parn)
Messenger RNA biogenesis [BR:
tdw03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
130437174 (parn)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
RNA_bind
R3H
FMP23
CENP-I
RRM_Thc1
PTHB1_pf
G_path_suppress
Motif
Other DBs
NCBI-GeneID:
130437174
NCBI-ProteinID:
XP_056624362
LinkDB
All DBs
Position
2:complement(429174..436441)
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AA seq
669 aa
AA seq
DB search
MHMGFRAPPAGRAAGSGSAHFKEALPRLCEAVEEADFIAIDGEFTGISDGPSVSALTNGL
DTPEERYCKLRKHSMNFLLFQFGLCTFKYDQNQSIYITKAFNFYVFPKPFNRTSPDIKFI
CQSSSIDFLASQGFDFNKVFRSGIPYLTQEEESQLREQYEERRGQINGNGPITYTPNSSM
SVSHVPEDQRAFIKTVEDKVEDLLKNSEKSVDLEPCTGFQRKLIYQTLNSRQSKGLHVET
LENDKKERFIQISKVDDEERRRREQQKQQREQEELNDAVGFSRVIRAVSKSGKLVVGHNM
LLDVMHTIHQFCGPVPEELDDFKEVTMSVFPRLVDTKLMASIQPFKEIIHNTSLGELHKR
LIEKPFKSPQTECPENFQSYDTSSEQLHEAGYDAYITGLCFISMANYLGTFLTPPKSHIS
ARSKLLEPFYNKLFLMRVIDIPYLNMCGPDLQPKRDHVLYVTFPKEWKTCDLYQLFSAFG
NIQVSWIDDTSAFVSLSQTDQVQIAINTSRYAESYRIQTYAEYIQSRQKSTNTNRRWASD
GWADTSYSAAAMMTGSGFSHGHSRQHSKKRSISPSLEEQNCNADSSWTHYCSVKKIKTDG
DGSQAQADVSGSDGAVDWLGQQTDEGGSYPGQDQEEEPIRGKRNRKHKKRKSDDAETTPP
PLFDVPQVW
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
atgcatatgggcttcagagcgccgcctgctggaagagcggccggaagcggaagtgcgcat
tttaaggaggctcttcctcggttgtgtgaagctgtagaagaggcagattttatcgctata
gatggagaattcacagggatcagtgatgggccgtcagtcagtgctctgactaatggactg
gacacaccagaggagagatactgcaaactgagaaagcactccatgaacttcctcctgttc
cagtttggactctgcacattcaaatatgaccagaatcaatccatatacatcactaaagcc
ttcaacttctacgttttccccaaacccttcaaccgcacatctccagacataaagttcatc
tgtcagagttccagtattgatttcttggccagtcagggattcgacttcaacaaagtcttc
cgcagcgggatcccgtatctgacgcaggaggaggagtcacagctgagggagcagtatgag
gagaggcggggtcagatcaacggcaacggtccaatcacgtacacgcctaattctagcatg
agtgtcagtcacgtccctgaagaccagagagcgtttataaagactgtggaagacaaagtt
gaagatcttctcaagaactctgagaaatctgtggacctggagccctgcacaggctttcag
aggaagctcatctatcagacactcaactcaaggcaatctaaaggacttcacgttgagacg
cttgagaatgacaagaaggagcgtttcattcagatcagtaaggtggatgatgaggagagg
aggaggagagagcagcagaaacaacagcgagagcaggaggagttgaatgatgctgtgggt
ttctccagagttatcagagccgtctcaaagtctggcaagctggttgttggacacaatatg
ttgttggacgtgatgcacactatccatcagttctgtggaccggtgcctgaggagctggat
gactttaaggaggtgacgatgtctgtgtttcccaggctggtcgacacaaagctgatggcg
tcgatccaaccctttaaggagatcattcataacacatcactgggagaactacacaaacgg
ctgatagagaaaccttttaaatcaccccaaacagaatgtcctgaaaatttccagagttac
gacacatcatcagaacagcttcatgaagccggttatgacgcgtacatcactggactgtgt
ttcatctccatggcaaactatctgggtacttttctcactcccccaaagagtcacatctct
gctcgctccaaactccttgaaccattttacaataaattgttcctgatgagggtgattgac
attccttacctgaacatgtgtggaccagacctgcagcctaagagagatcatgttctgtac
gtcacattccctaaagaatggaaaacctgtgacctatatcagctcttcagcgccttcggt
aacatccaggtgtcgtggattgatgacacatcagcatttgtttctctcagtcagacggat
caagtgcagatagctataaacaccagccgttacgcagagagttaccgcatccagacctac
gcggagtatatacagtccagacagaagagcacaaacactaacaggaggtgggctagtgat
gggtgggcagacacttcctacagcgctgctgccatgatgaccggctctggcttcagccac
ggccacagccggcagcattcaaagaagagaagcatcagtccgtctctggaggagcagaac
tgtaatgctgacagcagctggactcattactgcagtgtaaagaagatcaaaactgacgga
gacggttcacaagcgcaagctgacgtcagcggctcagatggggcggtggattggttggga
cagcagacggatgaaggtggatcgtatccgggccaggatcaggaagaggagccaattcga
ggtaaacggaaccgcaagcacaaaaagaggaagtcagacgatgcagagaccactccgccg
ccgctcttcgacgttcctcaggtttggtag
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