Triplophysa dalaica: 130438221
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Entry
130438221 CDS
T09616
Symbol
cnot6b
Name
(RefSeq) CCR4-NOT transcription complex, subunit 6b
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
tdw
Triplophysa dalaica
Pathway
tdw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tdw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
130438221 (cnot6b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tdw03019
]
130438221 (cnot6b)
Enzymes [BR:
tdw01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
130438221 (cnot6b)
Messenger RNA biogenesis [BR:
tdw03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
130438221 (cnot6b)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
130438221 (cnot6b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
LRR_14
LRR_8
LRR_4
LRR_1
LRR_LRWD1
LRR_R13L1-DRL21
Glyco_hydro_130
Motif
Other DBs
NCBI-GeneID:
130438221
NCBI-ProteinID:
XP_056626034
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All DBs
Position
16:5314159..5322146
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AA seq
553 aa
AA seq
DB search
MPKEKYDPPDVRRMYTIMSIEDANSGKKSNWDGLEITGNVRSLSSALWSLTHLTSLHLND
NCLSRIPPDIAKLHNLMFLDLSSNKIRSLPAELGNMVSLRELHLNNNQLRVLPYELGKLF
QLQTLGLKGNPLSQEIMSLYHEPDGTRRLLNYLLDNLSGAIKRISTEQPPSRSWIVLQEH
DRTRPTALITVMCYNMLCDKYATRQLYGYCPSWALNWSYRKKAIMQEILGCNADIISLQE
VETEQYYNYFLVELSKQGYDGFFSPKSRARTMSESDRKHVDGCAIFFKTEMFSIVQKHTV
EFNQLAMANSEGSEAMLNRVMTKDNIGVAVLLELKQELLEMSSGKSLQEKQLLLVANAHM
HWDPEYSDVKLVQTMMFMSEVKNIIDKASRNLKLSGETSSIPLVLCADLNSLPDSGVLEY
LSTGGVECTHKDFRELRYIDSLTNFNCNGKNGTSSGRITHGFKLKSAYENGLMPHTNYTS
DFKGIIDYIFYSRPELSVLGVLGPLDKTWFMENNIRGCPHPHVPSDHFSLFAQLELALPY
LPSLNGVHLPGRR
NT seq
1662 nt
NT seq
+upstream
nt +downstream
nt
atgcccaaggagaaatatgacccgcctgatgtcaggcggatgtacactatcatgtccatt
gaggatgcaaacagtgggaaaaaatccaactgggatggacttgaaataactggtaatgtt
cggagtctcagctcagccctttggtcgctcactcacctcacctctctgcacctaaatgac
aattgcctttcacgcatcccaccagacattgccaagctgcacaaccttatgttcctggac
ttgtcctctaataagatcaggagcctgccagcagagcttggcaacatggtgtctctcagg
gaactgcatttaaataacaaccagctgcgggtcctgccttacgaattgggcaaactgttt
caattacaaacactgggcttgaaaggcaatccactcagtcaagaaatcatgagcctctat
cacgagccagatggcacccgccgactgctgaactatcttttggacaatctctctggtgct
atcaagcgcatctcaacagaacaacctccgtccagatcctggattgtgctgcaggagcat
gatagaacgaggccaacagccctaataactgtaatgtgctacaacatgctctgtgataag
tacgccacgcgccagctctacggctactgcccgtcctgggcccttaactggagctacagg
aaaaaggcaatcatgcaggagatcctcggctgcaatgcagacatcatcagcttacaggaa
gtggagacggagcagtattacaactacttcctggtggagttgagtaaacagggatacgat
ggattcttcagccccaaatcgcgagccagaaccatgtcggaatccgacagaaaacatgtt
gatggatgtgctatattcttcaagacagaaatgttcagcattgtgcagaaacatacagta
gagtttaaccagctggctatggccaactctgagggctcggaggcaatgctcaatcgagtc
atgaccaaggataacattggggttgctgtgttgttggagctaaagcaggagttactagag
atgtcatctggtaaatccctccaggagaaacagctcctactagtggcgaatgctcacatg
cactgggacccagaatattctgatgtgaagctggtgcagaccatgatgttcatgtcggag
gtaaagaatataatagacaaggcatctcgcaacctgaagctctccggagaaaccagctcc
atccctctggtgctgtgtgctgatctcaattcacttcctgactcgggtgttttggagtac
ctgagcactggtggagtggaatgcacacataaagacttcagagaactgcgctacattgac
agcctgaccaacttcaactgcaatggcaagaacggcacgtccagcggacgcatcacacat
ggtttcaagctgaagagtgcctacgagaacgggctcatgcctcacaccaattacacttca
gattttaagggtatcattgactacatcttctactccaggccagagctcagcgtgctgggc
gtcctggggcccttggacaaaacctggttcatggagaacaatatacgtggttgcccacac
cctcatgttccctccgatcacttctccctgtttgcacaactggagttggccctgccttat
cttccctctctcaatggagtccacttacctggacgcaggtag
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