Triplophysa dalaica: 130438900
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Entry
130438900 CDS
T09616
Symbol
polr2a
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
tdw
Triplophysa dalaica
Pathway
tdw03020
RNA polymerase
tdw03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tdw00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
130438900 (polr2a)
09124 Replication and repair
03420 Nucleotide excision repair
130438900 (polr2a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tdw03021
]
130438900 (polr2a)
03400 DNA repair and recombination proteins [BR:
tdw03400
]
130438900 (polr2a)
Enzymes [BR:
tdw01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
130438900 (polr2a)
Transcription machinery [BR:
tdw03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
130438900 (polr2a)
DNA repair and recombination proteins [BR:
tdw03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
130438900 (polr2a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_R
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
130438900
NCBI-ProteinID:
XP_056627158
LinkDB
All DBs
Position
17:complement(8326462..8340587)
Genome browser
AA seq
1965 aa
AA seq
DB search
MHGPPSSDSACPLRLIKRVQFGVLSPDEIKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQ
GVIERSGRCQTCAGNMTECPGHFGHIELAKPVFHVGFITKIMKVLRCVCFFCSKLLVDSN
NPKIKDILTKSKGQPRKRLTHVYDLCKGKNICEGGEEMDNKFGVEQQETEEDISKEKGHG
GCGRYQPRIRRSGLELFAEWKHVNEDSQEKKILLSPERVHEIFKRISDEEDVILGMDPKY
ARPEWLIVTVLPVPPLAVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQSGAAAHV
IAEDVKLLQFHVATMIDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFS
ARTVITPDPNLQIDQVGVPRSIAANMTFPEIVTPFNIDRLQELVRRGNSQYPGAKYIIRD
NGDRIDLRFHPKPSDLHLQIGYKVERHMCDGDIIVFNRQPTLHKMSMMGHRVRILPWSTF
RMNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTL
TAVRKFTKRDVFLERGEVMNLLMFLSTWDGKMPQPAILKPRPLWTGKQIFSLIIPGHINA
IRTHSTHPDEEDSGPYKHISPGDTKVIVENGELIMGILCKKSLGTSAGSLVHISYLEMGH
DITRLFYSNIQTVVNNWLLIEGHSIGIGDSIADKATYQDIQNTIKKAKQDVIEVIEKAHN
NELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVAGSKGSKINIS
QVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMG
GREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVE
FQNMATLKPSNKAFEKKFRFECSNDRALRRTLQEDVVKDVMTNAHVQSALEREFEKMKED
REILRAIFPTGDSKVVLPCNLARMIWNAQKIFRINPRTPTDLNPVRVVDGVKELSKKLVI
VNGEDMLSRQAQENATLLFNIHLRSTLCSKRMTDEFRLSTEAFDWLLGEIETKFNQSIAH
PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKRPKTPSLTVF
LLGQAARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQNTVVTEDQEWVNVYYEMPDF
DVTRISPWLLRIELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIM
NSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIII
TEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALEREL
YHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGINRQDTGPLMKCSFEETVDVLMEA
SSHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGISVAGPTGMF
FGSAPSPMSGMSPAMTPWNTGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSPGYS
PAWSPTPGSPGSPGPASPYIPSPGALSPNYSPTSPAYEPRSPGGYTPQSPGYSPTSPSYS
PTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP
SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP
TSPSYSPTSPNYTPTSPSYSPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPS
YSPSSPRFTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSPT
SPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPTYTPTSPKYSPTSPTYSPTSPKY
SPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSPAISPDDSDEENN
NT seq
5898 nt
NT seq
+upstream
nt +downstream
nt
atgcacggaccgccttcaagcgacagcgcatgcccattgcgcctcatcaagagagtgcaa
ttcggcgtcctcagccctgatgaaattaaacggatgtccgttactgaagggggtatcaaa
taccccgagaccacggaaggaggacgcccaaaactgggtggactcatggaccctcgacaa
ggggtaattgaaagatcaggcagatgccagacgtgtgcaggtaacatgactgaatgccct
ggtcattttggtcacattgagctggctaagccagtctttcatgttggcttcattacaaaa
attatgaaggtcctccgctgtgtctgtttcttctgttctaagctgcttgtggattcgaac
aatccaaaaatcaaagacattctgaccaagtcaaaggggcagccaagaaagcgtttgacc
cacgtctatgacctctgtaaaggcaaaaacatttgtgagggtggagaggagatggacaac
aagtttggagtggagcaacaggagactgaagaagacatttccaaagagaagggtcacgga
ggctgtggcaggtatcagccacgtatccgtcgctctggcctggagctgtttgctgagtgg
aagcatgtaaatgaggactctcaagagaagaagattctcctcagccctgaacgcgtgcac
gagatcttcaaacgcatttcagatgaggaggatgtgatcttgggcatggaccccaaatac
gctcgaccggagtggttgattgtcactgttttgcctgtgccgcctcttgcagtgagaccg
gctgtggtgatgcaaggttctgctagaaaccaggatgacttgacacataagttggctgac
attgtgaaaatcaataaccagctaaggcgaaatgaacagagtggagccgcagctcatgtt
atagcagaggatgtcaagctgcttcagtttcatgtggccaccatgattgacaatgaactt
cctggtctaccaagagccatgcaaaagtcaggacgcccactgaaatccttgaagcagagg
cttaagggtaaggaaggacgtgtccgaggtaatctgatgggcaagcgtgtggacttctct
gcccgaactgtcatcacacccgaccccaacctgcagattgaccaggtgggagttccccgc
tccatagctgccaacatgaccttcccagagatcgtcacaccctttaacattgacagactt
caagaacttgtcaggagaggtaacagccagtaccctggagcaaaatatatcatccgtgat
aatggtgacagaatcgacctgcgattccaccctaaaccaagtgatcttcaccttcagata
ggatacaaagttgagcggcacatgtgtgatggggacattattgtattcaacagacagcca
acgctgcacaaaatgtctatgatgggacacagagtgcgaatcttgccttggtctacattt
cgaatgaaccttagtgtgaccaccccatacaatgctgactttgatggtgatgagatgaac
ttgcacttgccgcagtctctggagactcgagctgagatccaggaactggccatggtgcct
cgtatgattgtcacaccacagtctaaccgacccgtcatgggaatcgtgcaggacacactc
acagctgtgcgcaagttcacaaaaagagatgtgttcttagaaaggggtgaggtgatgaac
cttctgatgtttctctccacatgggatggtaaaatgccacagccagcaatcttgaagcct
cgtcctctctggacgggcaaacagatattcagcctgatcattcctggacacattaatgcc
atacgcacacacagcactcaccccgatgaagaggacagtggcccttataaacacatctcc
cctggagacaccaaggttattgtggagaacggggagctgatcatggggatcctgtgcaag
aagtctctgggaacttcagccggctcgctggtccatatctcataccttgagatgggccac
gacatcacaagacttttctattccaacatccagactgttgtcaacaactggcttctcatt
gaaggtcactctatcggtattggagattccattgctgataaggcgacgtatcaggacatt
caaaacactatcaagaaagccaaacaagatgtcatagaggttattgagaaagcccacaat
aatgagctggagcccactccaggtaacactctgagacagacctttgagaaccaggtcaac
cgcattctgaacgatgctcgtgacaaaactggatcctctgcccagaaatcgctgtcagag
tacaacaatttcaaatccatggtggttgctggttccaaagggtcgaaaattaacatttca
caggttattgctgtggtggggcagcagaacgttgagggtaagcgaatcccttttggtttc
aagcatcgcactttgcctcacttcatcaaagatgactacggaccagagagtagaggcttc
gtggagaactcctatttggccggtctcacaccaacagagttcttctttcatgccatgggt
ggcagagagggtttgatcgacacagctgtcaaaactgctgagacaggttacattcagcgt
cgtctgatcaagtctatggagtctgtgatggtcaagtatgatgctacagtcagaaactcc
ataaaccaggttgtccagctaagatatggagaggatgggctggcaggagagtctgtggag
ttccaaaatatggccaccctaaagccatccaacaaagcatttgagaagaagttcaggttt
gaatgcagcaatgatcgagctctccgtcgcactctgcaggaggatgtggtgaaagacgtg
atgaccaatgctcacgtccagagtgcactagaaagggagtttgagaagatgaaggaagac
cgagagatcctgagggccattttccccacaggagacagcaaggtggtattgccttgcaat
ctcgctagaatgatttggaacgctcagaagattttccgcatcaatcctcgaacaccaact
gacctaaaccctgttcgagttgtggatggagttaaggagctgagtaagaagcttgtcatc
gtgaatggtgaagacatgttaagcaggcaagcccaggagaatgccactctactctttaat
atccacctgcgctccaccctctgttctaagagaatgaccgatgagttccgtcttagcaca
gaggccttcgattggctgctgggagaaattgagaccaaatttaaccaatctatcgctcac
cccggtgagatggtgggtgccctggctgctcagtccttgggagagcctgccactcagatg
accctgaacacattccattatgccggcgtgtctgccaaaaacgtcactctcggtgtgcct
cgtctcaaagagctgatcaacatctccaagcgtcccaagacaccctctctgacagtgttt
ctcctgggccaagcggcccgtgatgcagagagggcaaaagatatcctgtgtcgtctggag
cacacaaccctgcgcaaggtcactgccaacacagccatttattacgaccccaatcctcag
aacactgttgtgacagaggatcaggagtgggtgaacgtgtactatgagatgcccgacttt
gacgtgacccgcatttcaccctggttgctgcgcattgaacttgaccgcaaacacatgact
gaccgtaagctcactatggagcagatcgctgagaagatcaatgcaggttttggtgatgac
ctgaactgcatcttcaatgatgacaatgcggagaaactggtgctgcgaattcgaatcatg
aatagcgatgaaaacaaattccaagaggatgaggaggtggtggataagatggatgacgat
gtcttccttcgctgtattgaatccaacatgctgacggacatgactttgcaagggattgag
cagatcagcaaggtatacatgcatcttccacagacggacaacaagaagaaaatcatcatc
acagaggatggagagtttaaggctctccaggagtggattttggaaactgatggtgtgagc
ctcatgagggtcctcagtgagaaggatgtggatcctgtcaggaccacctccaatgacatt
gtggagattttcactgtccttggtattgaagcagtgcgtaaggctctggagagagagttg
tatcatgtcatctctttcgatggttcttacgtcaactaccgccatctggccttgctgtgt
gacacaatgacctgcagggggcatcttatggccattactcgtcatggcatcaacagacag
gacaccggaccactaatgaagtgctcatttgaagagacggtggacgttttgatggaagct
tcatctcatggtgaaagtgacccaatgaaaggagtatctgagaacatcatgctgggacag
cttgctcctgcaggcactggctgctttgacctgttgttggatgctgagaagtgcaagtat
ggcatggagatccctaccaacatccctggtatcagtgttgctggacccacgggtatgttc
tttggctccgcccccagccctatgagtggcatgtctccagccatgactccctggaacaca
ggagccactcctgcatatggtgcttggtcacccagtgttggaagtggaatgacacctggt
gcagcaggcttctctcctagtgctgcatctgatgccagtggtttttctcctggatactcc
ccagcctggtcacctactcctggctctcctgggtcacctggaccggccagtccttacatc
ccctcaccaggagccttgtctcccaactactctccaacttctcctgcatacgagcctcgt
tctccagggggttacaccccacagagccctggctactcaccaacctcgccgtcatactct
ccgacgtctccatcatactctcccacaagcccgaactacagccccacatctccgtcctac
tctcccacgtcaccttcttactcccccacatccccgtcttattcgccaacgtctccgagc
tactctccaacctcgccctcttattccccaacttcaccatcttactctccaacctcgcca
tcgtactctcccacgtctcccagctatagcccaacatcaccaagctacagtccaacctcc
cccagctacagcccaacatccccatcctattctccaacctctccatcttactctccaact
tcgccatcatactcgcctacctctcccagctactctccaacctctccgtcttactcccca
acgtctccgagctacagccctacttcgcccaattacacgcccacatcacccagttactcc
ccgacctctccgtcgtacagccccacctcgccgtcctactcacccacctctccaaattac
acaccgaccagcccaaattactcacccacatctccttcatactcacccacctccccgtcc
tactctccctccagtccacgcttcaccccacagtctcccacctacaccccaagttcacct
tcttacagcccaagctccccatcgtattctcccacgtctcccaaatacacccccacgtct
ccttcctacagtccaagctcgcccgagtacaccccgacatcccccaaatattcccccact
tccccgaagtattctcccacttcgccgaaatacagccccacctctccaacctactcccca
accacacccaagtacagtcccacctcccccacttactccccaacgtctcccacctacacc
ccaaccagccccaaatattcccccacctccccgacctattctccaacttctccaaaatac
tcgccaacatcccctacctactctccaactagccctaagggctccacctacagccccact
tctcctggctacagccccacctctccaacctacagcccggccatcagtccagatgacagc
gatgaggaaaataactaa
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