Triplophysa dalaica: 130438919
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Entry
130438919 CDS
T09616
Symbol
msh2
Name
(RefSeq) DNA mismatch repair protein Msh2
KO
K08735
DNA mismatch repair protein MSH2
Organism
tdw
Triplophysa dalaica
Pathway
tdw03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tdw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
130438919 (msh2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tdw03400
]
130438919 (msh2)
DNA repair and recombination proteins [BR:
tdw03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
130438919 (msh2)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_II
MutS_I
T3SS_needle_reg
AAA_27
Motif
Other DBs
NCBI-GeneID:
130438919
NCBI-ProteinID:
XP_056627201
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Position
17:7331146..7337822
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AA seq
933 aa
AA seq
DB search
MAVQPKQKLSMDSASENLFLKCYFSMPEKPDTTVRIFDRNDYYTVHGKDALFAAKEVFKT
NGVIKYLGTGKNRLEGVVLNKSNFETFVRDLLLVRHYRVEVYRNASKSSKDHDWQLVFKG
SPGNLTQFEEILFGSGGPGEAAAGVVGVRLGNGSDGQRVVGVGYVDSTLRKLGVCEFPDN
DQFSNLEALLVQIGPKECVLPGGDAGGDLGKLKQVVQRGGVLLTERKKSEFITKDIVQDL
NRLLKARKGETVSSAALPEMDRQIGISCLEAVIKYLELLSDEGNFGTFKITTFDLNQYMR
LDHAAVQALNLFQGSSEDKTGTHSLAGLLNKCRTPQGQRLVNQWIKQPLRDKNKIDERLD
LVEAFVEDSELRKSCQEDLLRRFPDLNRLAKKFQRQSCNLQDCYRVYQAVGQLSGLVLAL
ERYSGNHQVLLQAAFISPFNDLISDFCKFQEMIETTLDMNQIEHHEFLVKPSFDPTLSEL
RESMDDLEKAMQAALSSVARELGLEAGKTIKLDSNAQIGYFYRVTCKEEKSLRNNKKFTT
LDVQKNGVRFTNSKLSSLNDEYTKSREEYEEAQNAIVKEIISIASGYVDPVQTLNEVIAQ
LDAVVSFAVVTHAAPVPYVRPKILEKGSGRLILKASRHPCVEAQDDVAFIPNDVTFSRDK
EMFHIITGPNMGGKSTYIRQVGVIVLMAQIGCFVPCDEAELSVVDCVLARVGAGDSQIKG
VSTFMAEMLETAAILRSATEDSLIIIDELGRGTSTYDGFGLAWAISEHIATRIKSFCLFA
THFHELTVLAQQVPTVRNLHVTALTTDNTLTMLYKVKPGVCDQSFGIHVAELANFPKHVI
AKAREKAMELEEFQDFSRVEEGSDAGPEAKKRCLEKQEGEKIIEAFLAKVKALPVDGMTD
ETVKKELRKLRAEVIAQNNSFLNAILSHIHKVK
NT seq
2802 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgcaacctaaacaaaaactgtccatggacagtgcttctgaaaatttatttctg
aaatgttatttttctatgcctgaaaagccagacaccaccgtgaggatatttgatcgaaac
gattactatacggtgcacggaaaagatgcgctttttgcagccaaggaggttttcaagacg
aatggggtcatcaaatacctgggcacaggaaagaacaggttggagggtgtggtcctcaat
aaatcgaattttgaaacatttgtgagggacctgctgttggtcagacactaccgagtggaa
gtttacaggaatgccagtaaaagcagcaaagatcatgactggcagttagttttcaaggga
tctccaggaaacttaacccagtttgaggagattttatttggtagtggaggaccaggagag
gcagctgctggtgtcgttggtgtccgtcttggcaatggaagtgatggacaacgtgttgtt
ggtgtgggatatgtggactccaccctcagaaaacttggtgtgtgtgagttcccggacaat
gatcagttctccaatctggaggctttacttgtgcagatcggacccaaagagtgtgtgctg
cctggaggagatgcaggtggagaccttggaaagctcaaacaggtagtacagcgtggtggt
gttctgctcacggaaagaaagaaatcagagttcataaccaaagacattgtgcaggatctg
aatcggctactaaaggcccgtaagggagagactgtgtccagtgctgcacttcctgagatg
gatagacagattggcatttcttgcttggaagcagtcatcaaatacctggaactcctatca
gatgagggtaattttggtacctttaagataaccacctttgatctcaaccagtacatgcgt
ttggatcatgctgctgtgcaagcccttaatctcttccagggttcctctgaggataaaaca
ggcactcactctctggcaggtcttttaaacaaatgtcgtaccccgcaaggacagcggctt
gtcaaccagtggatcaaacagcctcttagagacaaaaacaaaatagatgagagattagat
cttgttgaagcttttgtggaagactccgagctgaggaagagctgtcaagaggatctcctc
cgtcgttttccagatttgaacagactggcgaaaaagtttcagcgtcagagctgtaattta
caggactgttaccgtgtctaccaagctgttgggcaactgtccggactggttttggctttg
gagagatacagtggaaatcatcaggtcctcctgcaagcagcgttcatctctcccttcaat
gacctcatatctgacttctgcaaatttcaagagatgattgaaactacattagatatgaac
cagattgagcatcatgagttcctggtaaaaccttcctttgatcccacgctaagtgagctc
cgagagagcatggacgacttggagaaagctatgcaggccgccttaagcagcgtggctcgt
gagcttgggctggaagcaggtaaaaccataaagctggactccaatgcccagatcggttac
ttttaccgagtcacatgcaaagaagagaaaagccttcgcaacaacaagaaatttacaact
ttagatgttcagaagaatggggtgcgctttacaaacagtaagctgagctctttgaatgac
gaatacaccaaaagcagggaagagtatgaagaggctcagaatgccatcgtcaaagaaatt
atcagcatcgcctctggatatgtggatccagtgcagactctgaatgaggtgatagctcag
ctggatgcagttgtgagctttgccgttgtgacccatgctgctccagtgccttacgtaagg
cccaaaatacttgagaaaggatcaggcagactcattctgaaggcatcaagacatccttgt
gtcgaagcccaagatgatgtggctttcattcctaatgatgtcactttctcaagggataaa
gagatgtttcatatcatcacaggaccgaatatgggtggcaagtccacttacatccgtcag
gtgggcgtaattgtcctgatggcacagattggctgctttgtgccatgtgatgaggcagaa
ctaagtgtggtggactgcgtgctcgctcgagtaggtgcaggggatagccagattaaagga
gtgtccacctttatggctgagatgctggagactgctgctatcctccgatcagcaacagag
gactctctcattattattgatgagttgggcagaggcacatccacatatgatggcttcggt
cttgcctgggcaatctcagagcacatagccacccgcatcaagtctttctgcctgtttgcc
actcactttcacgagctgacagtgttggcacagcaggtccccactgtgcgtaatctccac
gtcactgccttgaccacagacaacactcttacaatgctctacaaggtcaaaccaggtgta
tgtgaccagagctttgggattcatgtggcagaactcgccaacttccccaagcatgtgatt
gctaaagcacgggagaaggctatggagcttgaggagttccaggatttctcaagagttgaa
gaggggtcagatgctggacccgaagccaaaaaacgctgccttgaaaaacaggagggggag
aagatcattgaagcctttttggctaaagttaaagcacttcctgtcgatggcatgactgat
gaaactgtcaaaaaggagctacgcaagttgcgggcagaggtcattgcccaaaacaacagc
tttctcaatgcgatattgtcacatattcacaaagtcaaatag
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