Triplophysa dalaica: 130439464
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Entry
130439464 CDS
T09616
Symbol
rnf40
Name
(RefSeq) E3 ubiquitin-protein ligase BRE1B isoform X1
KO
K10696
E3 ubiquitin-protein ligase BRE1 [EC:
2.3.2.27
]
Organism
tdw
Triplophysa dalaica
Brite
KEGG Orthology (KO) [BR:
tdw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
tdw04121
]
130439464 (rnf40)
Enzymes [BR:
tdw01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
130439464 (rnf40)
Ubiquitin system [BR:
tdw04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
BRE1 proteins
130439464 (rnf40)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRE1B
CC_Bre1
zf-C3HC4
zf-C3HC4_3
BRE1
zf-C3HC4_2
zf-RING_5
DUF2992
zf-RING_2
zf-RING_UBOX
zf-rbx1
Prok-RING_4
Motif
Other DBs
NCBI-GeneID:
130439464
NCBI-ProteinID:
XP_056628061
LinkDB
All DBs
Position
17:complement(5570967..5580278)
Genome browser
AA seq
1003 aa
AA seq
DB search
MSKKGSMSGTGAGKRPTGGDSPPGPPEKKTKKEEKTTTTLIEPIRIGGVSSTEEMDMKVI
QFKNKKLYERLEQRQALEDELREKIEKLEKRQATDDTTLLIVNRCWTQLEENIHDLLQRV
DPKDPPAPVQTPATPPVPADVPLPSAAPLPAPEPAAPLPAPVEGEDGLPQPPAHKGEEQK
ELAHVKEQEQQHADTEEKPPEKRVEDGIPAPPPPLSESAKSFLAILDNSSEEELTLQLQD
RMQFSKGGVACVVCIFDRLHNSIEELCSRVKTAVCEDDSQQEIVTTNRTLLEENSRLQEL
ASSLQGRHHKMSLEYNELVDKVTSSETKVSEMETAVEDLQWDIEKLRKREQKLNKHLAEA
LEQLNSGYHATGGSGGLPGGQITLSIQKFESLNAELEQNQELANSRMAELEKLQQELQEA
VRESEKLKMDLRNIPEEVLKETPEYKCLQSQFSLLYNESLSVKTQLDEARALLLTAKNAH
LRQIEHMESDELSLQKKLRTEVIQLEDTLAQVRKEYEMLRIEFEQNLAANEQAGPINREM
RHLISSLQNHNHQLKGDVQRYKRKLRETHMEINKFKCQSGDTSAQMLEESLGDGGLEVKK
EEDEDQEEEEERRRELERQRAREREREAERERERERERERQRSEEMKRKDSDMLKMLRAE
LKKAQESQKEMKLLLDMYKSAPKEQRDKVQLMAAEKKSKAEVDELRQRVRELEERERKES
KKLADEDALCKIRVAEETIEHLQKKLAATKQEEEALLSEMDVTGQAFEDMQEQNSRLMQQ
LREKDDANFKLMSERIKSNQIYKLLREEKEELADQVLTFKTQVDAQLLVVQKLEEKEGVL
QSTLASLEKELTLRTQALELNKRKAVEAAQLAEDLKVQLEHTQTKMREIQASVLDNRNAR
ERESANLKRAQEDLSRLRRKLEKQKKVEVYTDADEILQEEINQYKAKLRCPCCNTRDKET
VLTKCFHVFCYECLKTRYDTRQRKCPKCNAAFGANDFHRIYIT
NT seq
3012 nt
NT seq
+upstream
nt +downstream
nt
atgtccaaaaagggaagcatgtctggcactggggctgggaagcgtcccacaggaggggat
agtcccccgggtccgcctgaaaaaaagacgaaaaaagaggagaagactactacaactctt
atagagcccattcggattggcggggtttcttctacggaggagatggacatgaaggtcatt
cagttcaagaacaagaagctttacgagcgccttgaacagagacaggctttggaggatgag
ttgagagaaaagattgagaagctggagaagaggcaggccacagatgacaccaccctgctt
atcgtcaaccgctgctggactcagctggaggaaaatattcatgacttgctgcagcgtgta
gaccccaaggatcccccagcacctgtccagactcctgccacacctcctgtccctgcagat
gtgcctctcccatctgccgccccattgccggctcctgaacctgctgctccattaccagct
ccagtggagggagaggacggccttccccagcctcctgcacataagggtgaagaacagaaa
gagcttgcacatgtcaaggagcaagagcagcaacatgctgacactgaggagaagccacca
gagaaacgagtggaggatggaatccctgctcctccaccacctctcagtgagagtgcaaag
tctttcctggccattctggataacagtagtgaggaggaactcaccttgcagctgcaggac
agaatgcagttcagcaaggggggcgtagcctgcgtggtctgcatctttgatcgtctgcac
aacagcattgaggagctgtgctctagagtgaaaacagccgtctgcgaggatgacagtcag
caagagatagtcaccacaaaccgcacacttctagaggaaaacagtcggttgcaagaactc
gcttcctctcttcaggggagacaccacaaaatgtctttagaatataatgaactagtggac
aaagtcacaagttccgagactaaagtgtctgagatggaaaccgctgtggaggacctgcag
tgggacatcgagaaacttcgtaagagagagcagaagctgaataaacatctagcagaggct
ttggaacagcttaattcgggttaccatgccactggcggttctggcggattacctggtggt
caaatcacactcagtatacaaaagtttgagtctctgaatgcagagctggagcagaaccag
gagcttgccaacagccgtatggcagagcttgagaaactccagcaagagctacaggaagct
gttcgggagagtgagaagctaaagatggatctaagaaatataccagaggaggtgttgaag
gagacgccagaatataagtgcctccagtcacaattctctctgctctacaatgagtctctg
agcgtgaagacccagctggatgaagccagagctctactgctcactgccaagaacgctcac
ttgcggcagatagagcacatggagagtgacgagttgtctcttcagaagaagttacgtact
gaagtcatccagctagaagacacactagcccaagtccgaaaagaatatgaaatgctcagg
atcgagttcgagcagaatcttgctgccaatgagcaagcaggcccaataaacagagaaatg
agacacttaatcagcagtctgcagaatcacaatcaccagctcaaaggggatgtgcagaga
tataagagaaagttgcgtgagacacatatggaaattaacaagttcaagtgccagagcggt
gatacaagtgcgcagatgttggaagaaagcttgggtgatggtggactggaggttaagaag
gaggaagacgaggaccaggaggaggaggaagagaggaggagagagctggagaggcagcga
gctcgggagagagagagggaggccgagagagaaagggagagagaaagagagcgcgagaga
cagcgcagcgaggagatgaagaggaaagactcagacatgctgaagatgctcagagcagag
ctcaaaaaagctcaggagtctcagaaggaaatgaaactgctgctagacatgtacaaatca
gcccccaaagaacagcgggacaaagtccagctcatggcggcagaaaagaaatccaaagca
gaggtggacgagttgaggcagagagtacgagaactggaggaaagggaaaggaaggagagc
aagaaactggcggatgaagatgccctctgcaagattcgcgtggccgaggagaccatcgaa
cacttgcagaaaaaactggctgctacgaaacaggaggaagaagctctgttgagtgaaatg
gatgtgacgggacaggcgtttgaagacatgcaggagcagaacagcaggctcatgcagcag
ctcagagaaaaagatgatgccaacttcaagctgatgagtgagcgaatcaaatccaaccag
atttacaagctcctgcgggaggagaaggaggagctggcggaccaggtgctcacgttcaaa
acccaggtggacgcgcagctgctggttgtgcagaagctagaggagaaggaaggtgtcctg
cagagcactcttgcttctcttgagaaagagctcacgttgcgtactcaagcgctggaactc
aacaaacgcaaggcggtggaagcagcccagttggcagaggaccttaaagtgcagctggag
cacactcagaccaagatgagggaaatccaagcgtctgtgttagataatcgtaacgcccgt
gagagggagagcgccaaccttaagagagcacaggaggacttgtccagactgcggcgtaaa
ctagagaagcagaaaaaggtggaggtgtatacagatgctgatgagattctgcaagaagaa
ataaatcagtataaggctaaactgcggtgtccctgttgtaacacccgagacaaggagacc
gtcctcaccaagtgtttccacgtcttctgctacgaatgcttgaagacccgttacgacact
cggcagaggaagtgccccaaatgcaacgctgctttcggagccaatgacttccaccgcatc
tacataacttaa
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