Triplophysa dalaica: 130440194
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Entry
130440194 CDS
T09616
Symbol
vps13a
Name
(RefSeq) LOW QUALITY PROTEIN: vacuolar protein sorting-associated protein 13A
KO
K19525
vacuolar protein sorting-associated protein 13A/C
Organism
tdw
Triplophysa dalaica
Brite
KEGG Orthology (KO) [BR:
tdw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tdw04131
]
130440194 (vps13a)
Membrane trafficking [BR:
tdw04131
]
Endosome - Golgi transport
Rab GTPases and associated proteins
Rab associated proteins
130440194 (vps13a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VPS13_N
VPS13_M
VPS13_VAB
VPS13_C
RRM_fung
Motif
Other DBs
NCBI-GeneID:
130440194
NCBI-ProteinID:
XP_056629132
LinkDB
All DBs
Position
18:complement(19101020..19151408)
Genome browser
AA seq
3230 aa
AA seq
DB search
MVFESVVVDVLNRFLGDYVVNLDCSQLSLGIWGGDAILRNLEIKENALSQLDIPFKVRAG
HIGRLELKIPWKNLYTQSVEATLDEVYLLIVPTASIKYDAEKEERQLQEARQRELQRIEE
TKQKAAEKENPKAVKQDTFAEKLVTQVIKNLQVKISNIHVRYEDDVTNPNSPLSFGVSLQ
NLSLQTADQNWKPCLLDEKAKLFFKLVRLDNLFAYWNVNSELYSNHNPEEALRQLKHSVA
VKNTIPQDYHFIFRPISANAKLRMNPRSDVDFSSPKVDLVVNLPEVAVELSRPQYVSILE
LLGSVDMMTRNLPYRKFRPNVPVHTNAPQWWRYVITGVLEVNIKPSLHMWSWKNIRCHRQ
LVKKYRELYKNKITSKKPADALLKKLEETERTLDIFNITMARQQAEMEASKAGLRIYRPG
VKVEEEQSEGWFGWMWSWSGDGGAPSKDVKTGGFDELMSPAEKSKLYAAIGYSETAINPN
LPKNFENMKIHFQLLNLSLSIKESREKPEIIKLSVIDLIAMFTQRPAAQAIKISAQLSSF
EVSGLPRGQKPPILLSPRRGVGENNKALLNLMFETNPLDGLADQKIRIESQPLEIIYDAM
TVNSMSAFFMPPKDLQLDELTNATLMKLEQFRDRTSTGLMYIIETQKVLDLNIDLMASYV
IVPENGFYDPKHNLAILDLGHFQMSSQSKAGLPQLSANSSTLEDIMSRAYDSFDIQLSSL
QFLYTKAGGDWKRARPLRQSSFHILEPVDLKVVFSRAMVVTDSRMPKFKIFGELPLLSLR
ISDDKVRGVLALLSSIPLPESRPAPQTKAPQVTPKVSKRGNTPQLTPRRPAIDDLRASII
YGSDEELFFDAPSSPVEDLPFFEASSDYLQGSASGKRPSMVLKDPMKNMTEFLLLFEINK
LSVQLCRLSKAQEVSVLHLFIDGLGTELKLRTFDMSSNTFLREICLECSEYLDSEEKKVH
LITTFDNTEEDLLTLEYIKADKNAPDFKTAYDNTEQLIKVNFSSLDIHLHTEALLNSMNF
LNNLLPPLKKETQEEQPVLPKEEEEEEVEEAKIDESAVTKKSANKKSKYEDVVNLHIRAD
LNCLKVFIRGEKARISEICIEGLVSQVQMMKKSVEILANLKNIVILDCDKEALYKKAVSI
ADKEVFDFRMVNHVDATEGDAYTDMHIVDTSVTLTVGCIQVIFLNKFLSSILAFVNNFQE
AKNALAEVTAQAAEKAASGVLELAERSTRISLYVDIKAPVVFLPQSSVSHNVIVADLGLV
TVKNHFKIVSSPTHNKIPPVVDIMAVGLSDLKMYRTTFTDGKFKGEIQLLKPVNMDLSIK
RNLSASWYHSIPDIQINAHLKPMSLILSQEDLTIVLKTLSENLSETSDVPQVPSSSEKAD
TVSTKDSPSSGGNTVVIAAVVEGQKTGKLKNTLKVDFKFDSMTLVLYSPNTNEICMPDSR
DQSLRLAEFTLGTISTAVHMYSDSSMKASIKLTNCLLDDKRQRVKMITSRMMAMHQGRED
NVMVDIKYRQGRDGTVLDTVIQDFYLCASMEFLLTVADIFLKAMADGFSGPPKSNKQPAS
SSKDTAVPAQPVVAKTEMNVVVKNPEIIFVADLTRADAPALVVTTQCELTMKNDPSGQSL
TAAVSDLKVVACPFXREKRENNVTTVLQPCQVFFQSNQSPSQPQTIELSISSLTLKVSPI
IINTVITIQSALSPAPETPEELESPVQHDLWERRNLRDLKLWFLEEEGEEDTQSVVPLIP
QGESLKMSIQSICVTLEAGVGHRTVPMLLAKSSFHGDVKNWTTLINLHCHLDLEVNYYNE
MMGLWEPLLEPLDDEAKDGFRPWTLALKMKKKPVATSGVSDEVDGSVPDYKTVISFTSKD
QLNITLSKCGLHMLSNLGTAFAEAAKQTAGCIQTDQAPFVVKNRLGLAVSVQHSEVFTPI
GKESKQRVVELQDGENLNMDYTAESSDQFSAMTSLSTKNYIKPTPVGHTAPSVIPLIKTG
QGMYSVMHFDSGVTRFFVCQIYTVEGSKYVKIRSPFQIINHFSVPFRVYEGSVCLGTSLP
KDEFCVPLGSYRAELSLQPALEGEEEYNRSEGFTYNEVIQQPRECLQKTCYHHEDRTQMM
KVNMIPLPDAVMSHSTEEGFDKPFVLHLWPTVLLRNLLPFPITFNLKSNGDPPVELKEGH
SSQIHTAIMDFSIVELKLIGYLQQDWEGQYNLSSDQDEISFIKFQSLRFDEETETKAELD
IAIHVKKEEGQLVVAVHSPYWMVNKTGRLLQYKADDIHRKHPKDYDMPLLFSFKPRNFLQ
NNKIRLMISESELSDDFSIDTVGSYGDVKCKGRQKDYMVGVKIDASSFSLTRLVTFLPFY
MLVNRTKHVIRVCEEGLDQWTEARPEQAAVPFWPERDSKRLQVKVEGSKSSPRPFDFHQP
ENCLLLHLDKTLGGIIVDVNLTEHSAVIRFSDYHDGAAPFLLINHTKEDTLQYHQSCRKQ
KDSAWSPDELLDISLSGGDETQSLCSQTEIDELGPGQAVYYTWAEPTGSRILSWKWGKYK
GELKIEEDQLLDVNKEGKLFVVSFYEGLQRVALFTTDRCVYKLICDSEKMEVPQQEISIL
LQNIGVSLVNNTYSQEVAFIGITSSDVVWETKLKKRSRWKILSGKEAARLEHRYQEYMET
GPVDSAVIDLENDYQVLFAANGVAMRVLQPYDAPLRRNFLPALKVEYSVSTRQKTYRVQI
NRIQIQNQLPGAIFPYVYYPIKPPKSVRMDSEPKPLTDVSIITRAAGHSDILRIKYFKVL
IQEMDLRMDLGFLYAILELFTPEHSSAFTSEQEVELFDKDIEYLKTELNHVSATDTSPMS
LYEYFHISPIKLHLSFSLSTGGEDSNKKERETEIIPVQSLNLLLKSIGATLTDAQDVLFK
LAFFELTYQFRTTQQLQWEVIRHYSKQAIKQMYVLVLGLDVLGNPFGLIRGLSEGVEAFF
YEPYQGAIQGPEEFMEGMALGVKALVGGAVGGIAGAASRITGAMAKGVAAMTMDEEYQQK
RRETMNKQPSGLREGLARGGKGLVSGFVSGLTGIVTKPIKGAQKEGAAGFFKGVGKGLVG
ALTRPTGGIIDMASSTFQGIKRAAETSQEVESLRPQRFIHEDGVIRPYKEREGLGSQMLQ
SIENGRFAKYRYFAHAKVNESDFLMITKRGIFFVTKGTFGQLTCEWQYLFDEFTEDPMIV
EGRRLRIEAKERVKSVFHAKEFGKIINFKTPELAKWVLAKLEDARESLPK
NT seq
9693 nt
NT seq
+upstream
nt +downstream
nt
atggtgttcgagtcggtggtggtcgatgtcttgaacaggttcctgggagattatgtggtg
aaccttgactgctcgcagctcagccttggcatatggggaggtgatgccatattgagaaac
cttgaaataaaagaaaatgctctgagtcagcttgacattccttttaaagtccgggcagga
cacataggccgtttggaattgaaaatcccttggaagaatttgtacactcagtccgtggag
gctacgctggatgaagtctacctgctcatcgtacctactgctagtataaagtatgatgcg
gagaaagaggagcggcagctgcaggaggcgcggcagagagagctgcagcgcatcgaggag
accaaacagaaagcggcagagaaagagaatccaaaggcagtgaagcaagatacatttgct
gaaaaactggtcacacaggtgatcaaaaacctgcaagtgaaaatctccaacattcacgtc
cgttacgaggatgatgtcaccaatcctaattctccgttgtcgtttggagtttccctgcag
aacctcagtctccagacagctgatcagaattggaagccctgtctgctggatgagaaagcc
aaactgttttttaagctcgtgcgcttggacaatctgtttgcttattggaacgtgaattca
gagctctattccaaccacaatcctgaggaagctctgcgacaactaaagcacagcgttgcc
gtcaagaacaccatccctcaggattatcatttcatctttcgtccaatatctgcaaatgcc
aagctacggatgaatcctcgctcagatgtggatttctcctcaccgaaagtggatctagtg
gtcaacctgccagaggtggcagtcgagctcagccggccacagtatgtcagcattctggag
ctattgggttcagtggatatgatgacccggaaccttccatacaggaagtttcggccaaat
gtgcctgttcacaccaatgctcctcaatggtggcgttatgtgatcacaggggttttggag
gtgaacatcaagcccagccttcacatgtggtcatggaaaaacatccgttgccataggcaa
ctcgtgaaaaagtacagagagctctataagaacaagatcaccagcaagaaacctgcagat
gctcttctgaaaaagctggaggaaactgaacgaactcttgatatattcaacatcacgatg
gcaaggcagcaggccgagatggaggcttcaaaagcaggactacgaatatatcgtcctgga
gtgaaggtggaagaagagcagtccgagggctggtttggctggatgtggagctggtctgga
gacggcggtgcaccaagcaaagatgttaaaacaggaggttttgatgagctgatgtcgcca
gcagaaaaatccaaactatacgctgccataggatacagcgagacagccatcaatcccaat
ctgcccaaaaattttgagaacatgaagatacattttcagctgctcaacctgtcgctgtct
atcaaagagagccgtgagaagccagagattatcaaactctccgtcattgatcttatagcc
atgttcacgcagagacctgccgctcaagcaataaagatctctgcccagctgtcatcgttt
gaagtgtccggtcttcctcgaggccagaagccccccattctattgtcaccgcgccgtggg
gtcggggagaataacaaggctcttctgaatctcatgtttgagaccaacccgctagacgga
ctcgcagaccagaaaatacgcatagagtctcagccacttgagataatctacgatgctatg
acagtgaacagtatgtcagctttcttcatgcctccaaaagacctgcaactggatgaactg
accaatgccacgctcatgaagctcgagcagttcagagacaggacatccacaggacttatg
tacatcattgaaactcagaaggttctcgatctgaacatcgacctcatggcttcatatgtc
attgtaccagagaacggcttttatgaccccaaacacaaccttgctattcttgacttgggt
cattttcagatgtcgagtcagagcaaagctggactgcctcagttgtctgcgaacagcagc
acattagaggacatcatgtccagagcgtatgacagttttgacatccagctgagcagctta
cagttcctctacacgaaagcaggtggtgactggaagagagctcgtccgctgaggcagtcg
tcatttcacatcctggagcctgttgacctgaaggtggtcttcagtcgagctatggtggtg
acagactccagaatgcccaagtttaagattttcggtgagctccctctgctgtctctgcgt
atctcggatgataaagtgcgtggcgtcctggcattgctcagcagcattcctcttccagag
agccgccccgcccctcagactaaagcaccacaggttacacccaaggtgtccaagcgaggg
aacacgcctcagctcacccctagaagaccagcgatagatgacctgcgtgcatccatcata
tatggctctgatgaggaattgttcttcgacgcccccagttcaccagtagaagatttgccg
ttctttgaggcttcatctgactacctgcaggggtcggcctctggaaagagaccctctatg
gtgctgaaggatcccatgaagaatatgacagagttcctcttgttatttgagatcaataag
ctttctgttcagctttgtcgcttgtccaaggcacaggaagtgagcgttctccatctgttc
attgacggtttagggacggaactgaaactccgtacctttgatatgtcatcgaacactttt
ctacgcgaaatctgtctcgagtgttcagagtacttggattctgaggaaaagaaggttcac
ctcatcacaacgttcgacaacactgaagaggatctcctcacgctggaatacatcaaggcg
gacaaaaatgcccctgatttcaaaactgcctatgataacacagagcaactaatcaaggtg
aatttctcctcgctggatatacacctgcacaccgaggcacttctcaattcaatgaacttc
ctaaacaacctcctgccacctctcaagaaagagacacaagaggagcagcctgtccttcca
aaggaggaagaggaggaggaagtagaggaggctaaaatagacgagtctgctgtcacgaaa
aaatctgccaataagaagtcaaagtatgaggatgtggtgaatttgcacatccgagcagat
ctaaactgtttgaaggtcttcataagaggagagaaagccagaatctctgagatctgcatt
gagggactggtttctcaagttcagatgatgaagaagtcggtggagattctggctaacctg
aagaacattgtaattctggattgtgacaaagaggctctgtacaaaaaggcagtgtccatt
gcagacaaagaggtgtttgattttcgcatggtgaaccatgtggacgcaacagagggagat
gcatacacggacatgcacattgtggatactagtgtaacactaactgtgggctgcatacaa
gtcattttcctcaacaagtttttgtcttcgatactggcattcgttaataattttcaagag
gccaaaaacgctttggcagaagtaacagctcaggcagcagagaaggcagcttcaggggtg
ctggagctggcagagagaagcacacggatttctctctatgtggacatcaaagctccggtt
gtctttctcccacaatcctctgtttcacacaatgtcattgtggcagatctcggtttagtg
actgttaagaaccactttaagatcgtctcctctccgacacacaataagatcccacctgtg
gtagatatcatggctgtggggctgagtgatcttaaaatgtacaggaccacattcactgat
ggaaaatttaagggtgagattcaactgctcaaaccagttaatatggacctttcaatcaaa
cgcaatctatccgcctcttggtatcatagcatccctgacatacagatcaatgcacatctt
aaaccaatgagtctgatcctgagtcaggaggatctgactatagttttgaaaactctgagt
gaaaatctgtctgagacttcagatgttcctcaagttccatcaagctctgagaaagcagac
acggtgtctaccaaagattctccgagctctggggggaacacggttgtgatagcggcagtg
gtggagggtcagaaaacaggcaaactgaagaacactctgaaagtggatttcaagtttgat
tccatgaccttggtcctctacagcccaaataccaatgagatctgcatgccagactcgcgt
gaccagagcttgaggttggcagagttcacgctgggcaccatctccaccgcagtgcacatg
tattctgacagctcaatgaaagcttctatcaaactcacgaactgcctgctggacgataag
agacagagagtgaaaatgatcacatccaggatgatggccatgcatcagggcagggaagat
aacgttatggtggacataaagtacaggcaaggccgggacggcaccgttctggacacagtg
attcaggacttttacctgtgcgccagcatggagtttctcctcacggtagctgatatcttt
cttaaagctatggcagatggcttctctggtcctccgaagagcaataaacagccagccagt
tcttctaaagacacagcagttcctgctcagccggtggtggccaagactgagatgaacgtt
gtggtgaagaatcctgaaataatttttgtggccgacctaacacgcgccgatgccccggct
ctcgtcgtcacgacgcagtgcgagctgaccatgaagaacgatcccagcggacagtccttg
acggcggccgtctcggatctaaaggtggtggcgtgtccgttcntgagggagaagcgagaa
aacaacgtgacgacggtgcttcagccctgtcaggtgttctttcagagcaaccaatcacct
agtcaacctcaaaccatcgaactgtccatcagctccctcacgctcaaggtgtctcccatc
atcataaacaccgtcatcaccattcagtcagcgctgagccctgcacccgagaccccggag
gagctggagagccccgtgcaacacgatctgtgggaacgtcggaacctgcgagacctgaag
ctctggttcctggaggaggaaggagaggaagacacccagtctgtagttcctctcattcca
cagggagaatctctcaaaatgagcatccagtccatctgtgtaacgctggaggctggggtg
ggtcatcgcaccgtgcccatgctcctggccaaatcctcgtttcacggagacgtgaagaac
tggactacactcattaacctccactgtcacctggacctggaggttaattattataatgag
atgatgggtttatgggagccacttttggagccactggatgatgaagccaaagatggtttt
agaccctggacactggcgcttaagatgaagaagaaaccagtagcgacctccggggtgtct
gatgaggtggacggcagcgtgcctgattataaaaccgtaatcagctttacaagcaaagac
cagctcaacatcactctctccaagtgtggcctacacatgctcagtaatctggggacggcg
tttgcagaagctgccaagcagactgctgggtgcattcagaccgaccaagctccgtttgtg
gtgaagaatcgtttgggtttggcggtgtctgtgcagcacagcgaggtgtttacacctatc
ggtaaagagtctaaacagcgtgtcgtggagctccaagatggagagaatctaaatatggac
tacacagcggagtccagcgaccagttctctgccatgaccagcctcagcaccaaaaactac
ataaaacccactcctgttggccacactgcaccgagtgtcatcccactgatcaaaaccggg
caagggatgtacagcgtcatgcactttgactcgggtgtcacacgcttctttgtctgtcag
atttacaccgtggagggcagcaaatatgtcaagatccgctctccattccagatcatcaat
catttctcagtgccgttccgggtttatgagggttctgtgtgtctgggcacttctctgcct
aaggatgagttctgtgtcccactgggttcctacagagcagagcttagcttgcagcctgca
ctggaaggagaggaagagtacaaccgctcggagggcttcacttacaatgaggtgattcag
caacccagagagtgtttgcagaaaacttgctatcatcacgaagacaggactcagatgatg
aaggtcaacatgattcctcttccagacgctgtgatgtcacacagcaccgaggaggggttt
gacaagcccttcgttctgcacctgtggcccaccgtcctcctccgcaaccttctgccgttc
cccatcaccttcaacttaaagagtaatggagatccccccgttgaactaaaggagggtcac
tcgtcccaaatccatacggccatcatggatttttccattgtggagttgaagctcattgga
tatctgcagcaggattgggaaggccagtataatctcagcagtgaccaggatgagataagc
ttcatcaaattccaatcgctgcgatttgacgaagaaacggaaacgaaggcggagctagac
attgccatccatgttaaaaaggaggagggtcagctggtcgtggccgtgcactcgccctat
tggatggtgaataagaccggcagactgctgcagtataaagcagacgatattcatcgcaaa
cacccgaaggactatgacatgcctctcctcttctccttcaaaccacgcaacttcctgcag
aacaacaagattcgtttaatgatttcggaaagcgagttatcagatgatttctccattgac
acagttggtagttacggtgatgttaaatgcaaaggaaggcagaaggattacatggttggg
gtgaagatagacgcgtccagcttcagtttaacacggctggtgacgttcctgcctttctat
atgctggtgaaccgaaccaagcatgtgattcgagtttgcgaggagggtctggatcaatgg
acagaggcccgacccgaacaggccgccgttccattctggccagaaagagactcaaagagg
cttcaagtcaaagtcgaaggatctaagtcatcaccacgaccctttgacttccaccaacca
gagaactgcctcctgctgcacctggacaaaactctgggcggtattatcgttgacgtgaat
ttgacagaacattcggctgtgatacgcttctctgattaccatgacggcgcggctccgttt
ctcctcatcaaccacacaaaagaggacacactgcagtaccaccaaagttgcaggaagcag
aaagattctgcttggtctccagatgagttactggatatctctttatcagggggggatgag
actcaatccctctgctctcagacagaaatcgatgagctgggtccaggtcaggctgtgtac
tacacttgggctgaacccacaggatcacgaatcttgagctggaaatggggcaagtacaaa
ggagaactcaagattgaagaggaccagttgttggacgtgaacaaggagggaaaactgttt
gtcgtctcattttatgaaggcctccaacgcgtggcgctttttaccacagatcgctgtgtt
tacaagctaatttgcgacagtgagaagatggaggtgcctcagcaggaaatcagtatcttg
ttacagaacatcggcgtgtcactggtcaacaacacctacagccaggaagtggcctttatt
ggcatcactagttctgatgtggtatgggagactaaactcaagaagcgcagccgatggaag
attttgagcggaaaagaggccgcaaggttggagcaccgctaccaagagtatatggagact
ggcccggtggatagtgctgtcatcgacctagagaacgattaccaggtgttatttgctgct
aatggggtggccatgagagtactgcagccctatgatgctcctctcaggaggaactttctg
cctgccctgaaggtggagtacagcgtctccacccgccagaaaacctatagagtccagatc
aacagaattcagatccagaatcaattgcctggagccatcttcccatatgtgtactacccc
atcaaaccaccaaagtcggttaggatggactcagaaccaaaaccgctgactgatgtcagc
atcatcacccgagcagccgggcactcggacatcctacgcatcaagtatttcaaggtgctg
attcaggaaatggacctacggatggatcttgggttcctgtatgccatcctagagctcttc
actcccgagcactccagtgctttcacgtctgaacaagaggttgagttgtttgacaaggac
attgagtatctgaagacggagttgaatcatgtttcagcgacagacacctctcccatgagc
ctgtacgagtacttccacatatctcccataaagcttcatttgagtttctctttgagcacc
ggaggtgaagacagcaataagaaagagagagagaccgaaatcattcctgttcagtcgctc
aatctgcttctgaagagtatcggagctacgctcactgacgctcaggacgtcctcttcaaa
ctggccttctttgagctgacataccagttccgtaccacccaacagctgcagtgggaggtg
atccgtcattactccaaacaggctatcaagcagatgtacgttcttgttttgggtttagac
gtcctcggcaatccattcggactcatccgtggcctgtctgaaggagtcgaggccttcttc
tatgagccctaccagggggctatccagggcccagaggagtttatggaagggatggcgctt
ggtgtgaaagctctggttggaggggctgtgggcggcattgcgggagcagcgtctaggatc
acgggtgcgatggctaaaggtgttgctgccatgacaatggatgaggaatatcagcagaag
agaagagaaactatgaacaagcagcccagcggtcttcgagaagggctggcgcggggaggg
aaaggactcgtatctgggtttgtgagcggcctcaccggaattgtgactaaacccattaaa
ggagctcagaaggaaggggctgccggtttctttaaaggtgtgggaaaaggtttagtcgga
gctctcaccagaccaacaggtggcatcattgacatggccagcagcacatttcagggcatc
aagagagctgccgagacatctcaggaagtggagagtttacgcccacagcgtttcattcac
gaggatggagtcattcggccatataaggagagagagggattaggcagtcaaatgcttcag
agtattgaaaacggacggtttgccaaatacaggtactttgctcatgctaaagtgaatgag
tccgatttcctgatgattactaaaaggggaatatttttcgtgacaaagggaacgtttggt
cagttgacatgcgaatggcagtatctgtttgatgagttcactgaagatcccatgattgtg
gagggcagaagacttcgcattgaagcaaaggaaagagtgaaatctgtgtttcatgccaaa
gagtttggaaagatcatcaatttcaaaactccagaattagcaaagtgggttcttgccaag
cttgaagatgccagggaaagtctgccaaaataa
DBGET
integrated database retrieval system
