Tepidibacter aestuarii: T8CH_0682
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Entry
T8CH_0682 CDS
T08095
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
teb
Tepidibacter aestuarii
Pathway
teb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
teb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
T8CH_0682
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
teb03019
]
T8CH_0682
03009 Ribosome biogenesis [BR:
teb03009
]
T8CH_0682
Enzymes [BR:
teb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
T8CH_0682
Messenger RNA biogenesis [BR:
teb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
T8CH_0682
Ribosome biogenesis [BR:
teb03009
]
Prokaryotic type
rRNA helicases
T8CH_0682
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_30
Cas3-like_C_2
Hyccin
AAA_22
Helicase_RecD
AAA_19
Motif
Other DBs
NCBI-ProteinID:
CAH2212441
LinkDB
All DBs
Position
T8CH:713569..715149
Genome browser
AA seq
526 aa
AA seq
DB search
MENMKFENLDLSREIKQAVADMGFEEPSPIQAQAIPHILAGKDIIGQAQTGTGKTAAFGI
PVLDMVNEKDSSVQAIILCPTRELAIQVAGELGKLAKYKKNVRTLPVYGGQPIDRQIKAL
KKGVQIVIGTPGRVMDHMNRKTLKLGNVKMIVLDEADEMLDMGFREDIETVLQQLPEERQ
TTFFSATMPKAILNLTKKYQKDPQLVKVVRKALTVPNIEQFYIETKSKNKSDVLSRLVDI
YNPKLSVVFCNTKRKVDELVSELQSRGYFADALHGDLKQAQRDNVMAKFRNGTIEILVAT
DVAARGIDVDDVECVFNYDVPQDDEYYVHRIGRTGRAGRSGRAFSFVSGKKEIYKLRDIQ
RYTKTNMKRHDIPSLSDVEEIKTNLFLEKVKNVIEEGHLTSQVNFLEKLMEEYTSLDIAA
ALLKMSMGDQNKEEIKEDLFEDTGAESGMVRLFINIGRKQNIKPKDILGAIAGETGIPGK
LIGTIDIYDRYTFVEVPREHTKDVLTIMKNNTIKGKTINIEPANRK
NT seq
1581 nt
NT seq
+upstream
nt +downstream
nt
atggaaaacatgaaatttgagaatttggatttatcaagagaaataaagcaagctgtagct
gatatgggatttgaagaaccatctcctatacaagctcaagcaataccacatatattagca
ggaaaagatataatagggcaagcgcaaactggtacgggtaaaacagcagcctttggtatt
cctgtattagatatggttaatgaaaaagatagtagtgtgcaggctataattttatgccct
acaagagaattggctatccaggtagcgggagaactgggaaaattagctaagtacaagaag
aacgtaagaacactaccagtatatggtggacaaccgatagatcgccaaataaaagcatta
aaaaaaggagttcagatcgttataggtactcctggtagagttatggatcatatgaatcgt
aagacattaaagcttggaaatgtaaagatgatagttttagatgaagcggacgaaatgcta
gatatgggatttagagaagatatagagactgtattacaacaacttccagaggaaagacaa
actactttcttctcggctacaatgccaaaagcaatattaaatcttacaaagaagtatcaa
aaagatcctcaacttgtaaaggttgttcgtaaggcattaacagttccgaatatagaacag
ttttatatagaaacaaagtctaagaataaatcagatgtattatcaagacttgtagatata
tacaatcctaaattatctgttgtattctgtaatacaaagagaaaagttgatgaattagta
tcagaacttcaatcaagaggatattttgctgatgcacttcatggtgatttaaagcaagct
caaagagataatgtaatggctaaatttagaaatggaactatagaaatactagttgcgaca
gatgtagctgctagagggatagacgttgatgatgtagagtgcgtatttaactatgatgta
ccacaagatgacgaatattacgtacacagaatcggaagaactggacgtgcaggaagatca
ggacgtgcattctctttcgtatcaggaaagaaagaaatatataaattaagagatattcaa
agatatactaagactaatatgaaaagacatgatataccatctcttagtgatgttgaagaa
attaaaactaacttattcttagaaaaagttaaaaatgttatagaagaaggacacttaact
agccaagttaatttcttagagaagttaatggaagaatacacttctttagacatagctgct
gcacttcttaaaatgtcaatgggtgatcaaaataaagaagaaataaaagaagatttattt
gaagatactggtgcagaatcaggaatggtaagattatttataaacataggtagaaagcaa
aacataaaacctaaggatatattaggagctatagctggagaaactggtattccaggaaag
ttaatagggactatagatatatacgatagatatacatttgttgaggttccaagagagcat
actaaagatgtattaactataatgaaaaacaatactataaaaggtaagactataaatata
gagcctgctaatagaaaatag
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