Tepidibacter aestuarii: T8CH_2135
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Entry
T8CH_2135 CDS
T08095
Symbol
pnpA
Name
(GenBank) polynucleotide phosphorylase (PNPase)
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
teb
Tepidibacter aestuarii
Pathway
teb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
teb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
T8CH_2135 (pnpA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
teb03019
]
T8CH_2135 (pnpA)
03016 Transfer RNA biogenesis [BR:
teb03016
]
T8CH_2135 (pnpA)
Enzymes [BR:
teb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
T8CH_2135 (pnpA)
Messenger RNA biogenesis [BR:
teb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
T8CH_2135 (pnpA)
Transfer RNA biogenesis [BR:
teb03016
]
Prokaryotic type
tRNA degradation factors
T8CH_2135 (pnpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
S1
RNase_PH_C
PNPase
KH_1
OB_RRP5_4th
KH-I_KHDC4-BBP
Mug135_C
KH_KhpA-B
Motif
Other DBs
NCBI-ProteinID:
CAH2213972
LinkDB
All DBs
Position
T8CH:complement(2090482..2092602)
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AA seq
706 aa
AA seq
DB search
MYKNFEMDLAGRKLSVEIGKVCEMSNGSCMIKYGDSVVLVNACASSQPREGIDFFPLSVD
YEERLYSVGKIPGGFIKREGRPSEKAILTSRLIDRPIRPLFPKGYRNDVQVVTTVMSTDP
NCPTDIVAMIGSSVALSISDIPFNGPTGAICIGLIDEEFVVNPTVDQKKESQLNLVVSGT
KDAIMMVEAGSNEVSEDLMLDAIMFAHEQIKEIVAFIEKIVEEVGKEKQDVVLYKPDEDI
EVAVREYACENMRQAIRTVEKLERAENMAKVKEDTLSHFEEMYPENIKDVDAVLHSIIKE
LVRDMIVNEKIRPDNRKSDEIRSIWSEAGVLPRTHGSGLFTRGQTQVLTVATLGALGDVQ
IIDGLEDEEDKRYMHHYNFPAYSVGETRPLRGPGRREIGHGALAERALEPMIPSKEEFPY
TIRLVSEVLSSNGSTSQASVCGSTLSLLDAGVPIKDMVAGIAMGLIKENENIAILSDIQG
MEDFLGDMDFKVAGTPNGITAIQMDIKIAGIDKEILKTALAQAREGRIHILNEMKKTLDT
PREEMSKYAPRIIKLKIHPDKVRDVIGPGGKTITAIIEETGVKIDIEKDGEVFIMSPDKE
LGQRAKDMILTIVKEVEEGEIYEGKVTRIMNFGAFVEILPKKEGLIHISNIAHERVEKVE
DVLKIGDTVKVKVTEIDKQGRINLSRKALIEKPVKKETEKKDTEGK
NT seq
2121 nt
NT seq
+upstream
nt +downstream
nt
atgtataaaaattttgaaatggatttagcaggaagaaaactttctgtagaaataggtaaa
gtatgtgaaatgtcaaatggaagttgtatgataaaatatggtgacagtgttgtacttgta
aatgcatgtgcatcttctcaaccaagagagggaatcgatttcttcccacttagcgttgat
tatgaggaaagactttactcggtgggtaaaatacctggaggattcataaagagagaagga
agaccatcagaaaaggctattttaacatctagattaatagatagacctattagaccttta
tttccaaagggatatagaaatgatgtacaagttgtaacaactgtaatgtctacagatcct
aattgtccaactgatatagtggcaatgataggttcatctgtggctctttcgatatcagat
ataccatttaatgggccaactggagctatatgcataggattaatagacgaggagttcgtg
gttaacccaactgtagatcagaaaaaagaaagtcagttaaacttagtagtatctggaact
aaagatgctataatgatggttgaagcgggttctaatgaagtaagcgaagatttaatgcta
gacgctattatgtttgcgcacgaacagataaaagagatagttgcgtttattgagaagata
gtagaagaggtcggcaaagaaaagcaagatgttgttttatataagccagatgaagatatt
gaagtagctgttagagaatatgcttgtgaaaatatgagacaagctataagaacagttgaa
aagcttgaaagagctgaaaatatggccaaggttaaagaagatactttatctcattttgaa
gaaatgtatccagagaatattaaagatgtggatgcagttttacatagtatcataaaagag
ttagtaagagatatgattgtaaatgaaaaaataagaccggataatagaaagtcagatgaa
ataagatctatatggtcagaggctggagttcttccaagaactcatggttcaggacttttc
acaagaggacaaacacaggttttaactgtagcaactcttggagctttaggtgatgtacaa
ataatagatggacttgaggatgaagaagataaaagatatatgcaccattataatttccct
gcgtatagtgtaggagaaacaagaccattaagaggccctggaagaagagaaataggacat
ggagcacttgcagaaagagcacttgagcctatgattccaagtaaagaagagttcccatat
acaataagattggtatcggaagtattaagctctaatggatctacatctcaagcaagtgtt
tgcggtagtacattatcattacttgatgcaggagttcctataaaagatatggtagcaggt
attgcgatgggacttataaaagaaaatgaaaatatagcgattctatctgatatacaagga
atggaagacttcctaggagatatggactttaaagttgccggtactccaaatggaataaca
gctatacaaatggatataaaaatagctggaatagataaagaaatactaaaaactgcactt
gctcaagctagagaaggtagaattcatatacttaatgaaatgaagaagacattagatact
cctagagaagaaatgtctaaatatgctcctagaataataaaattaaaaatacatccagat
aaggttagagacgttataggacctggtggaaagactataactgctataatagaagagact
ggtgttaaaatagatatagaaaaagatggagaagtatttataatgtctccagataaagaa
ttaggacaaagagcaaaagatatgatattaactattgttaaagaagttgaagaaggggaa
atttatgaaggaaaagtaactagaataatgaattttggtgcttttgtagaaatattacct
aaaaaagaaggtttaattcatatatctaatatagctcatgaaagagtagaaaaagttgaa
gatgttcttaaaataggagatacagtaaaagttaaagttactgaaatagataagcaagga
agaataaatctttcaagaaaagcattaattgaaaagcctgtaaagaaagaaactgaaaag
aaagatacagaaggaaaataa
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