Tepidibacter aestuarii: T8CH_3380
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Entry
T8CH_3380 CDS
T08095
Symbol
rpoC
Name
(GenBank) RNA polymerase (beta' subunit)
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
teb
Tepidibacter aestuarii
Pathway
teb03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
teb00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
T8CH_3380 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
teb03021
]
T8CH_3380 (rpoC)
03400 DNA repair and recombination proteins [BR:
teb03400
]
T8CH_3380 (rpoC)
Enzymes [BR:
teb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
T8CH_3380 (rpoC)
Transcription machinery [BR:
teb03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
T8CH_3380 (rpoC)
DNA repair and recombination proteins [BR:
teb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
T8CH_3380 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Pro_Al_protease
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
CAH2215233
LinkDB
All DBs
Position
T8CH:complement(3403451..3406936)
Genome browser
AA seq
1161 aa
AA seq
DB search
MFELNNFESIKIALASPEKIRQWSKGEVKKPETINYRTLKPEKDGLFCERIFGPTKDWEC
HCGKYRRVRYKGVVCDRCGVEVTKSKVRRERMAHIELAAPVSHIWYFKGIPSRMGLLLDM
SPRSLEKVLYFASYIVIDAGETGLTEKQLLTEKEYRDAQDKYGNTFKAGMGAEAVKELLV
KIDLESLSKELKSKLKDSTGQKRVRTIRRMEVVEAFKKSDNKAEWMILDVIPVIPPDLRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLELGAPDIIVRNEKRMLQESVDALIDNGR
RGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELKFYQCGLPKK
MALELFKPFVMNELVSKGYAHNIKSAKRMVEKVKSEVWDVLEEVIKGHPVLLNRAPTLHR
LGIQAFEPTLVEGKAIKLHPLVCSAYNADFDGDQMAVHVPLSVEAQAEARFLMLSTNNIL
APKDGSPITTPTQDMVLGSYYLTIEVEGEKGEGSVFKDYNEMLLAYQTGAVGLHAKVKVR
KKLVEEDKDVLVESTVGRFIFNENIPQDLGFVDRSESKHSLEVDFLVDKKQLGKIIDKCF
RKHGNTITAIMLDDIKNLGFRFSTRGAISIAVADMIIPKEKPQLISIAEEKVEKYERAYR
RGLISNEEREEKVIETWTNTTEEVTDALMNSLGRLNNVFIMAHSGARGSKNQIRQLGGMR
GLMANASGKTVEIPVKSNFREGLTVLEYFTSSHGARKGLADTALRTADSGYLTRRLVDVS
QDVIVREVDCGTQEGVLVSAFKDGNEVIEELYDRIVGRYTLDDVVDPKTNEVLVSADSRI
DEDDAKRIIDAGLEKVKIRSVLNCKTSHGVCSKCYGRNLATGKEVNIGEAVGIIAAQSIG
EPGTQLTMRTFHTGGVAGGDITQGLPRVEELFEARKPKGLAIITEISGTVQLDETGKKKE
VTIIDEFGESKTYSIPYGSRIKAKQGQFLEAGDPITEGSINPHDILGVKGVLGVQDYIVK
EVQRVYRMQGVDINDKHIEVIVRQMLSKVKIDDPGDTDLLPGGLVDILEFNAENEKTVAN
ELRPAVSKRVLLGITKASLATESFLSAASFQETTRVLTEAAIKGKEDNLIGLKENVIIGK
LIPAGTGMKRYKNIAVEKVEE
NT seq
3486 nt
NT seq
+upstream
nt +downstream
nt
ttgtttgaactaaataattttgagtcaataaaaatagctttagcatctcctgagaagata
agacaatggtcaaagggagaagtaaaaaagccggaaacgataaattatcgtactttaaag
ccagaaaaagatggactattctgtgagagaatatttggtccaactaaagactgggaatgt
cactgtggaaaatatagaagagttagatataaaggtgtagtatgtgacagatgtggagtt
gaggtaactaagtctaaagttagacgtgaaagaatggctcatatagagcttgcagctccg
gtatctcacatatggtacttcaaaggaattccaagtagaatgggactattacttgatatg
tcaccaagatcacttgaaaaagttttatattttgcatcttatatagttatagatgcaggt
gaaactggccttacagaaaagcagcttttgacagaaaaagagtatagagatgctcaagat
aagtatggaaacacattcaaagcaggaatgggagcggaagctgtaaaagaacttttagtt
aaaattgatttggaatctctatcaaaagaattaaaatcaaaattaaaagatagtacaggt
caaaaaagagttagaactataagaagaatggaagttgtagaggctttcaaaaagtctgat
aataaagcagagtggatgatccttgatgtaatccctgtaatacctccggatttaagacct
atggttcaattagatggaggaagatttgcaacttcagatttgaatgatctatacagaaga
gttataaatagaaataacagattaaagagattattagaattaggagcacctgatataatc
gttagaaatgaaaaaagaatgcttcaagaatcagtagatgctcttatagataatggtaga
agaggtagaccagtaactgggcctggaaatagaccattaaagtctttatctgatatgtta
aaaggaaagcaagggcgtttccgtcaaaaccttcttggtaagcgtgttgactattcagga
cgttctgttatcgtagtaggaccagaacttaaattctatcaatgtggtcttcctaagaaa
atggctttagaattatttaagccttttgtaatgaatgaacttgtatcaaaaggatatgct
cataatataaagagtgcaaagagaatggtagaaaaagttaaatcagaagtatgggatgtt
ttagaagaagtaataaaaggacatccagtactactaaaccgtgcgcctactctacataga
ctaggaatacaagcttttgaaccaactctagtagaaggtaaggctataaaattacatccg
ctagtttgttcagcttataatgcggatttcgacggagaccaaatggcagtacacgtacct
ttatctgttgaagcacaagctgaagctagattcttaatgctgtctactaataacatatta
gcacctaaggatggttctcctataactacaccaactcaggatatggtacttggaagttac
tacttaactatagaagttgagggagaaaaaggagaaggaagcgtatttaaggattataac
gaaatgcttcttgcataccaaactggagcagttggacttcatgctaaggttaaagtaaga
aagaaattagtagaagaagataaagatgtattagtagaaagtactgtaggtagatttata
tttaatgaaaatatacctcaagacttaggttttgttgatagaagcgaaagcaaacattca
ctagaagtagacttcttagttgataaaaagcaactaggaaaaattatagataaatgtttt
agaaaacatggaaatactattactgctataatgcttgatgatataaaaaatctaggattt
agattctcaacaagaggagctataagtatcgctgttgcagatatgataatacctaaagaa
aaaccacagttaatatcaatagctgaagaaaaggtagaaaaatatgaaagagcttataga
agaggtcttatatctaatgaagaaagagaagaaaaagttatagaaacttggactaatact
actgaagaagttacagatgctcttatgaatagtttgggtcgtttaaacaacgtatttata
atggcgcattcaggagccagaggtagtaaaaaccaaataagacagcttggaggaatgcgt
ggtcttatggccaatgcgtcgggtaaaacggtagaaataccagttaaatctaacttccgt
gaaggtcttactgtacttgagtactttacatcttcgcatggtgccagaaaaggactagca
gatacagcgcttcgtacagccgattcaggatacctaactagaagacttgttgatgtcagc
caagacgttatagttagagaagttgattgtggaacacaagaaggtgttttagtatcagca
tttaaagatggaaatgaagtaatagaagaattatatgatagaattgttggaagatacact
cttgatgatgtagtagatcctaaaactaatgaagttctagtgtcagctgattctagaata
gatgaagacgatgctaagagaataatagatgcagggcttgaaaaagtaaaaataagatct
gtacttaattgtaaaacttctcatggagtttgctctaagtgttacggacgaaatcttgct
actggtaaagaggtaaatataggtgaggcagtaggtataatagcagctcaatctataggt
gagcctggtacacagcttacaatgcgtactttccatacaggaggagttgcaggaggagac
atcacgcaaggtcttccaagggtagaggagctatttgaagctagaaaacctaaaggactt
gcaataataacagaaatttcaggtactgttcaacttgatgaaacaggaaagaaaaaagaa
gttactataatagatgaatttggagaatcaaaaacttattcaataccttatggatcaaga
attaaagctaaacaaggacaattcttagaagctggagatcctataactgaaggatctata
aatccacatgatatactaggagtaaaaggtgttcttggagttcaagattatatagttaaa
gaggttcaaagggtatatagaatgcaaggtgttgatatcaacgataagcatattgaagtt
atcgttagacaaatgttatctaaagttaaaatagatgatccgggagatactgatttactt
ccaggaggacttgtagatatacttgaatttaatgctgaaaatgaaaaaacagttgcaaat
gaattaagaccagcagtttcaaagagagttttattaggaataactaaagcgtctcttgct
acagaatcattcttatcagctgcttcattccaagaaacaacaagagtattaactgaagct
gctataaaaggaaaagaagataatctaataggtcttaaagaaaatgtaattataggtaaa
ttgatacctgcaggaacaggaatgaaaagatataagaatatagctgttgaaaaagtggaa
gaataa
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