Thioclava electrotropha: AKL02_007630
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Entry
AKL02_007630 CDS
T06997
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
tec
Thioclava electrotropha
Pathway
tec03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tec00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AKL02_007630
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tec03019
]
AKL02_007630
03009 Ribosome biogenesis [BR:
tec03009
]
AKL02_007630
Enzymes [BR:
tec01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
AKL02_007630
Messenger RNA biogenesis [BR:
tec03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AKL02_007630
Ribosome biogenesis [BR:
tec03009
]
Prokaryotic type
rRNA processing factors
AKL02_007630
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
QPZ90787
UniProt:
A0ABX6YSI1
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All DBs
Position
1595444..1598410
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AA seq
988 aa
AA seq
DB search
MAKKMLIDATHAEETRVVVVDGNKVEEFDFETINKRQLAGNIYLAKVTRVEPSLQAAFVD
YGGNRHGFLAFAEIHPDYYQIPVADREALLEEERQLAEAAAAEEDKPKSSRRRRSRRSSN
KAEKAKQDEAVISSDEIPGMGVVDPEAEGESADASSDETKAEAQMDTSEAPAEEAPAQEA
DEKPAAAAETASDEDDSDDSDDDDDDAGDDAAEADSGIESVADEDVEEEIRPARKPRPRR
YKIQEVIKVRQIMLVQVVKEERGNKGAALTTYLSLAGRYCVLMPNTARGGGISRKITNAA
DRKKLKEIAGELDVPKGAGLIVRTAGAQRTKTEIKRDYEYLMRLWEQIRDLTMKSVAPAP
IYEEGDLIKRSIRDLYNKDIDEVLVEGERGYRAAKAFMKMIMPSHAKNVKHYAESLPLFA
RHQVESYLASMFNPTVQLKSGGYIVIGVTEALVAIDVNSGRATKEGSIEETALKTNLEAA
DEVARQLRLRDLAGLIVIDFIDMDERKNNNAVEKRMKERLKTDRARIQVGRISGFGLLEM
SRQRLRPGMIESTTQPCAHCHGTGLIRSDDSLALSVLRAIEEEGTRKRTREVLVRAPVAV
ANYLMNAKREHVAVIEARYGMSVRIEAAPELVSPDFTIEKFKTATRNVAEVDSPVVSASA
SLMAEIDDAEDEVEIEVEAEAEAEEQTQKVETDAEEQPKKKRRRRRRRRKSNGENGENND
SAENGDQSSDDQNAKDQSTGDQSSDVTEGQETPTKAEPAQAAEAPADEAKTEAQTDAKTE
AQPEEEAPKPKRRSRARKKVEEPKPEAETAEAPTEGTEAKAEEEAPKPKRRTRSRKKVDP
EADAQAAVEGSAAEVKADAAEAAEEAPKPKRRSRARKKVEEPVAATSETPEPPETPQPDA
PTEPQETPQPDAPVETPEPTPQETPVDVPPEAPPAPEPETPFEQPPETPQPDAPVELPGG
PAFAETETEGETMTEEAPKPKKRGWWSR
NT seq
2967 nt
NT seq
+upstream
nt +downstream
nt
atggcaaagaagatgcttatcgatgccacccacgcggaagagacccgcgtcgtggtggtg
gacggcaacaaggttgaagaattcgactttgaaaccatcaacaaacggcagctcgccgga
aatatctatctcgcgaaagtaacgcgcgtcgaaccgtccctgcaggcggccttcgtcgac
tacggcggaaaccggcacggcttcctcgccttcgcggaaatccaccccgattactaccag
atcccggtcgccgaccgcgaagcgctgctggaagaagaacgccagctcgccgaagccgcg
gctgcggaagaggacaagccgaaatcctcgcgccgccgccgctcgcgccggtcgtcgaac
aaggcggagaaggccaagcaggacgaagcggtgatcagctcggacgagatcccgggcatg
ggcgtcgtcgatcccgaggccgaaggcgagagcgccgacgcgtccagcgacgagaccaaa
gccgaagcgcagatggacacctccgaggccccggccgaggaagcgcccgctcaggaggct
gatgaaaagcccgccgctgcggctgagaccgcgtccgacgaggatgacagcgacgattcc
gacgacgatgacgacgacgcgggcgatgacgctgccgaggccgatagcggcatcgaatcc
gtcgccgacgaggatgtcgaagaagaaatccgtccggcccgcaagccgcgtccgcgccgc
tacaagatccaggaagtgatcaaggtgcgccagatcatgctggtgcaggtcgtcaaggaa
gagcgcggcaacaaaggcgcggcgctgaccacctatctctcgctggcaggccgctactgc
gtgctcatgcccaacaccgcgcgcggtggtggcatcagccgcaagatcaccaacgccgcc
gaccgcaagaagctcaaggaaatcgcaggcgagctggacgtgccgaaaggcgcgggcctg
atcgtgcgcacggcgggcgcgcagcgcaccaagaccgagatcaagcgcgattacgaatac
ctgatgcgcctgtgggagcagatccgcgacctgacgatgaaatccgtcgcgccagcgccg
atctacgaggaaggcgatctgatcaagcggtcgatccgcgacctctacaacaaggatatc
gacgaggttctcgtcgagggcgagcgcggctaccgcgcggccaaggcgttcatgaaaatg
atcatgccgagccacgccaagaacgtgaagcactacgccgagtcgctgccgctcttcgcg
cgccatcaggtggagagctacctcgcatcgatgttcaacccgaccgtgcagctcaagtcc
ggcggttacatcgtgatcggcgttactgaggcgctcgtcgccatcgacgtgaactccggc
cgggcgaccaaggaaggctcgatcgaggaaaccgcgctcaagaccaacctggaggccgcc
gacgaagtggcccgccagctgcgcctgcgcgacctcgccggtctgatcgtgatcgacttc
atcgacatggacgagcgtaagaacaacaacgccgtcgagaagcgcatgaaggaacgtctc
aagaccgaccgcgcgcgcatccaggtcggccgcatctctggtttcggcctgctcgagatg
agccgccaacgcctgcgtccgggcatgatcgaatccacgacgcagccctgcgcccattgc
cacggcaccggcctgatccgctccgatgacagcctcgcgctgagcgtcctgcgcgcgatc
gaggaagagggcacccgcaagcggacccgcgaggttctggtgcgtgcgcccgtcgcggtg
gccaactacctgatgaacgccaagcgcgagcatgtcgcggtgatcgaggcgcgttacggc
atgtccgtgcgtatcgaagccgcgccggaactcgtctcgcccgatttcaccatcgagaag
ttcaagaccgcgacgcgcaatgtcgcggaagtggacagccccgtcgtgtctgcttcggcc
agcctgatggccgagatcgacgacgccgaggacgaggtggagatcgaagttgaagccgag
gcggaggccgaggagcagacccagaaggtcgagaccgacgccgaggaacagccgaagaag
aagcgtcgtcgccgtcgccgtcgccggaagtcgaatggcgagaacggggagaataacgac
tccgcggagaacggcgatcagtcgtcggatgaccagaacgccaaggaccagtccacgggc
gatcagtcctcggacgtgaccgaaggccaggagacgcccaccaaggccgaacccgcgcag
gcggcggaagctccggcggacgaggccaagaccgaggcgcaaaccgacgcgaaaaccgag
gctcagcccgaggaagaagcgccgaagccgaagcgccgttcgcgcgcccgcaagaaggtg
gaagagccgaaacccgaagccgagaccgcggaggcccccactgagggcaccgaagccaag
gccgaggaagaagcgcccaagccgaagcgtcgcacgcggtcgcgcaagaaggtggacccg
gaggccgacgcgcaagccgccgtcgaaggcagcgccgcagaggtcaaggccgacgccgca
gaggcagccgaggaggcgccgaagccgaagcgtcgctcccgtgcgcgcaagaaggtcgag
gagcccgtcgcagcgacgtccgagacgcccgagccgccggaaaccccgcagcccgacgcg
ccgaccgagccgcaagagacgccgcagcccgacgcaccggtcgagacgcccgagcccacg
ccgcaggaaacccctgtcgacgtgccgccggaagcgccgcccgcgcccgaaccggaaact
ccgttcgagcagccgccggaaacgccgcagcccgatgcgccggtcgaactgcccggtggt
ccggccttcgccgagaccgagacggagggcgagacgatgaccgaggaggcacccaagccc
aagaaacggggctggtggagccgctga
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