Terrabacter sp. C0L_2: U5C87_08100
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Entry
U5C87_08100 CDS
T09725
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ted
Terrabacter sp. C0L_2
Pathway
ted03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ted00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
U5C87_08100
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ted03019
]
U5C87_08100
03009 Ribosome biogenesis [BR:
ted03009
]
U5C87_08100
Enzymes [BR:
ted01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
U5C87_08100
Messenger RNA biogenesis [BR:
ted03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
U5C87_08100
Ribosome biogenesis [BR:
ted03009
]
Prokaryotic type
rRNA helicases
U5C87_08100
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
UvrA_inter
HEM4
adh_short
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
WVM98943
LinkDB
All DBs
Position
complement(1733131..1734933)
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AA seq
600 aa
AA seq
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MQSESAQTVAPEAESGAGDDRVSFADLGLDDKVLKALRDVGYEYPSPIQAATIPALLEGR
HVVGLAQTGTGKTAAFALPILSRLDLKQKSPQALILAPTRELALQVCEAFERYAAHLKGV
HVLPVYGGQAYGVQLSALRRGVHIVVGTPGRIMDHLEKGTLDLSELRFLVLDEADEMLKM
GFADDVETILADTPDDKHVALFSATMPSQIRRISKKYLHDPVEITVKSTTSTAPNITQRY
LTVSYPQKVDALTRILEVENFEGMIVFVRTKNETETLAEKLRARGFSAMAINGDIAQNQR
ERTVDQLKSGKLDILVATDVAARGLDVERISHVVNYDIPTDTESYVHRIGRTGRAGRSGD
AISFVTPRERHLLKAIEKATRQSLVPMTMPSVEDINATRLSRFDDAITEALSGDRIDFFR
DVIAHYVNEHNVPEADVAAALAVVAQGDEPMLLDPEQVRPARTFDDRGPRDRRDDRRDDR
RDDRGSRGRSDRGDRADRGQRRGTSGPMATYRIAVGRRHRVEPRQIVGALANEGGLGRND
FGHIDIRADHSLVELPATLPAGTMDKLRSTRISGQLIELSEDRGPRGGGTKKPYTKRPRD
NT seq
1803 nt
NT seq
+upstream
nt +downstream
nt
atgcagtccgagtccgcccagaccgtcgcccccgaggccgaatcgggtgccggcgacgat
cgcgtgtcgttcgcggacctcggtctcgacgacaaggtgctcaaggcgctgcgcgacgtc
ggctatgagtacccgtcgccgatccaggccgcgacgatcccggccctgctcgaggggcgc
cacgtcgtgggcctcgcacagacgggcacgggcaagacggccgccttcgcgctcccgatc
ctcagccggctcgacctcaagcagaagtcgccgcaggccctgatcctcgcgccgacgcgt
gagctcgccctgcaggtctgcgaggccttcgagcggtacgccgcccacctcaagggcgtg
cacgtgctgcccgtctacggcggccaggcctacggcgtgcagctgagcgcgctgcgccgc
ggcgtgcacatcgtcgtcggcaccccgggccgcatcatggaccacctggagaagggcacg
ctcgacctgagcgagctgcgcttcctcgtgctcgacgaggccgacgagatgctcaagatg
ggcttcgccgacgacgtcgagacgatcctcgccgacaccccggacgacaagcacgtcgcg
ctcttctccgcgacgatgccctcgcagatccggcgcatctcgaagaagtacctccacgac
ccggtcgagatcaccgtcaagtcgacgacctcgacggcgcccaacatcacgcagcgctac
ctcacggtcagctacccgcagaaggtcgacgccctgacccgcatccttgaggtcgagaac
ttcgaggggatgatcgtcttcgtccgcaccaagaacgagaccgagacgctcgccgagaag
ctgcgggcgcgcggcttctcggcgatggcgatcaacggtgacatcgcgcagaaccagcgc
gagcgcaccgtcgaccagctgaagtcgggcaagctcgacatcctcgtcgcgaccgacgtc
gcggcccgcggcctcgacgtcgagcgcatcagccacgtcgtcaactacgacatcccgacc
gacaccgagtcctacgtgcaccgcatcggccgcaccggtcgtgccggccgcagcggggac
gcgatctccttcgtcacgccgcgtgagcgccacctgctcaaggcgatcgagaaggcgacg
cgccagtcactcgtgccgatgacgatgccgagcgtcgaggacatcaacgcgacgcgcctg
agccgcttcgacgacgccatcaccgaggcgctctcgggggaccggatcgacttcttccgc
gacgtcatcgcgcactacgtcaacgagcacaacgtgccggaggccgacgtggcggcagcg
ctggcggtcgtggcccagggtgacgagccgatgctgctcgaccccgagcaggtccgtccc
gcaaggacgttcgacgaccgcggtccccgtgaccggcgcgacgaccgacgcgatgaccgg
cgtgacgaccgcggctcgcgtggccgcagtgaccgcggagaccgagccgaccgaggccag
cgccgcggcacctccgggcccatggcgacctaccgcatcgcggtcggccggcggcaccgc
gtcgagccgcggcagatcgtcggtgccctggccaacgagggcggtctcggccgaaacgac
ttcgggcacatcgacatccgagccgaccactccctcgtcgagctgccggccaccctgccc
gcgggcacgatggacaagctgcgctcgacccgcatctccggtcagctcatcgagctgagc
gaggaccgcggcccgcgcggtggcggcacgaagaagccgtacaccaagcgcccccgcgac
tga
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