Terrabacter sp. C0L_2: U5C87_08435
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Entry
U5C87_08435 CDS
T09725
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
ted
Terrabacter sp. C0L_2
Brite
KEGG Orthology (KO) [BR:
ted00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ted03016
]
U5C87_08435
Enzymes [BR:
ted01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
U5C87_08435
Transfer RNA biogenesis [BR:
ted03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
U5C87_08435
Prokaryotic type
tRNA splicing ligases
U5C87_08435
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
WVM98381
LinkDB
All DBs
Position
1809762..1811225
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AA seq
487 aa
AA seq
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MDLTVISAEGAGLPGPGAPATPTARVFDGPGMAADEAVLRRLELGAVGLDLAAPPVVLPD
FHHKRAMEMPSSIAVATRGTIRPTFTSSSVNCGMALIALDCDRPHERAIGEFYRAVRERY
PYPTRGGRELTRDEVTASAVDGARFAAERWGVESDELERIEEGGRVDLETWGGGARLHRE
IPALTWQLARLRFGTIGPSNHFVELQEVEEILDPEAAALLGVREGQVTLQYHAGGGVLTG
EIGHLFQRRRDTARVMQAAMAVQKPLFHLATSRSVAQLRERMRLYFASGCAPVELDTDEG
QRLMLANAAAMNYGYAFRLATYGALRSIAQRVFGGEPGRLVVDSPHNSIYEEEVEGRRAV
VHRHNSCRAYPADRMPEGTVFAQTGQAVLLPGTHRTSSYLAVAGDRSADSLHSACHGAGT
VIDQFEQDGRSVLDPSGRHTLRFRYSDKEPTRAHHLDDNGVNAAMSVLSDHRIVRPVARM
RPFAVLH
NT seq
1464 nt
NT seq
+upstream
nt +downstream
nt
gtggacctgaccgtcatcagcgccgagggcgccggcctgcccgggccgggtgccccggcg
acgccgaccgcccgggtcttcgacggccccggcatggcggccgacgaggccgtgctccgg
cggctggagctgggcgccgtcgggctggatctcgcagcgccgccggtcgtgctgcccgac
ttccaccacaagcgcgccatggagatgccctcgagcattgcggtcgcgacccggggaacg
atccggcccaccttcaccagctcgtcggtgaactgcggcatggcgctcatcgccctcgac
tgcgaccgaccgcacgagcgcgcgatcggggagttctaccgtgccgtcagggagcgctat
ccctacccgacgcgtggcggtcgagagctgacgcgggacgaggtgaccgcctcggccgtc
gacggcgcgaggttcgccgcagagcgctggggcgtcgagtcggacgagctcgaacgcatc
gaggagggcggccgcgtcgacctcgagacctggggtggcggcgcgcggctgcaccgcgag
atccccgcgctcacgtggcagctggcccggctgcgcttcggcaccatcggcccgtccaac
cacttcgtcgagctgcaggaggtcgaggagatcctggatcccgaggccgcggcgctgctc
ggtgtgcgcgagggccaggtgacgctgcagtaccacgcgggcggcggcgtcctcaccggg
gagatcgggcacctcttccagcggcggcgcgacacggcacgcgtcatgcaggccgcgatg
gcggtgcagaagccgctcttccacctcgcgacgtcccgttcggtggcgcagctgcgcgag
cgcatgcgcctctacttcgccagcggctgcgccccggtcgagctcgacaccgacgagggg
cagcggctcatgctcgccaacgccgccgcgatgaactacgggtacgcgttccggctcgcc
acctacggcgcgctgcgcagcatcgcgcaacgggtcttcggcggcgagcccggccgtctc
gtcgtcgactcgccccacaactcgatctacgaggaggaggtggagggtcgccgggcggtc
gtccaccggcacaactcctgccgggcctacccggccgaccggatgcccgagggcaccgtc
ttcgcccaaacgggccaagcggtcctcctcccggggacccaccggacatcgtcctacctg
gcggtcgccggtgaccgcagcgccgacagcctgcactcggcgtgccacggggccggcacc
gtcatcgaccagttcgagcaggacggtcgctccgtgctcgacccgtcgggccgacacacg
ctgcggttccgctactccgacaaggagccgacccgcgcccaccacctggacgacaacggc
gtcaacgccgcgatgagcgtcctgtccgaccaccgcatcgtgcggccggtcgcgcggatg
cgtccgttcgccgtcctgcactga
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