Terrabacter sp. C0L_2: U5C87_08880
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Entry
U5C87_08880 CDS
T09725
Symbol
ligD
Name
(GenBank) non-homologous end-joining DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
ted
Terrabacter sp. C0L_2
Pathway
ted03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ted00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
U5C87_08880 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ted03400
]
U5C87_08880 (ligD)
Enzymes [BR:
ted01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
U5C87_08880 (ligD)
DNA repair and recombination proteins [BR:
ted03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
U5C87_08880 (ligD)
BRITE hierarchy
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
WVM98465
LinkDB
All DBs
Position
1909401..1910348
Genome browser
AA seq
315 aa
AA seq
DB search
MRPMLATATTTIPVGDRWQHEVKWDGMRVLADVTDGGLRLFTRTERDVTVAFPELRGLAD
EYADMLLDGEIVSMRDGVPSFAAMAERFHVTDARRAAMLAEAAPVTLMTFDLLRLYGVEL
LPRAWSDRRATLERLELAGPRWQTPPTFSDGVTLHAATKEQGLEGIVSKRVDSVYVPGLR
SPHWLKSPHRGTVSVVIGGWRPESTGTVSRRLGAVLVGVPGPGGLRYLGRVGSGLAGKTG
QALLQDLESLTSAESPFATDVPAEDSAGATWVHPVLVADVQSLGLGGQGRLRQPAYKGLR
GDLTPGDVDDHADGE
NT seq
948 nt
NT seq
+upstream
nt +downstream
nt
atgcgccccatgctcgcgacggctacgacgaccattccggtcggcgaccgctggcagcac
gaggtgaagtgggacggtatgcgtgtcctggccgacgtgacggacggcgggctgcgcctc
ttcacccgcaccgaacgcgacgtcacggtcgccttcccggagctgcgcgggctggccgac
gagtacgcggacatgctcctcgacggcgagatcgtctcgatgcgtgacggcgtgccgtcc
ttcgcggcgatggccgagcgcttccacgtcaccgacgcgcgccgcgcggcgatgctcgcc
gaggccgcgcccgtcaccctcatgaccttcgacctgctgcgcctctacggcgtcgagctg
ctgccccgcgcctggagcgaccggcgcgcgaccctcgagcggctcgagctcgccgggccg
cgctggcagacaccgccgacgttctccgacggcgtgacgctgcacgccgcgaccaaggag
cagggcctcgaggggatcgtgtccaagcgcgtcgactcggtctacgtccccgggctgcgc
tcgccccactggctcaagtcaccgcaccgcggcacggtctcggtcgtcatcggcggctgg
cgccccgagtccaccggcaccgtgtcgcgccgtctcggagccgtgctcgtcggcgtgccg
gggcctggcgggctgcgctacctcggacgagtgggatccggcctcgccggcaagaccggc
caggcgctcctgcaggacctcgagtccctgacgtccgccgaatcccctttcgccacagac
gtgcccgccgaggactcggccggtgccacgtgggtccacccggtcctcgtggccgacgtg
cagtcgctgggactgggcggtcaggggagactgcgccagccggcatacaagggcctgcgc
ggtgacctcacccccggggacgtcgacgaccacgcggacggtgagtga
DBGET
integrated database retrieval system
