Terrabacter sp. C0L_2: U5C87_09490
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Entry
U5C87_09490 CDS
T09725
Name
(GenBank) DNA repair helicase XPB
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
ted
Terrabacter sp. C0L_2
Pathway
ted03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ted00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
U5C87_09490
09124 Replication and repair
03420 Nucleotide excision repair
U5C87_09490
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ted03021
]
U5C87_09490
03400 DNA repair and recombination proteins [BR:
ted03400
]
U5C87_09490
Enzymes [BR:
ted01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
U5C87_09490
Transcription machinery [BR:
ted03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
U5C87_09490
DNA repair and recombination proteins [BR:
ted03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
U5C87_09490
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ERCC3_RAD25_C
Helicase_C_3
ResIII
Helicase_C
DEAD
SNF2-rel_dom
Motif
Other DBs
NCBI-ProteinID:
WVM98583
LinkDB
All DBs
Position
complement(2040250..2041902)
Genome browser
AA seq
550 aa
AA seq
DB search
MNDGPLIVQSDKTLLLEVDHPSAEAARRAIAPFAELERAPEHVHTYRITPLGLWNARAAG
HDAEQVVDALMTHSRYAVPNALLVDVADTMDRYGRLTLEKEGLADSEEGTRLVLRTTDRP
VLEEVLRHKKIKPLTGERLDDLAVVVHPSERGTLKQELLKIGWPAEDLAGYVDGEAHPID
LQQDGWHLRPYQQHAVDGFWHGGSGVVVLPCGAGKTLVGAGAMAAAKATTLILVTNTVSA
RQWKDELLKRTTLTEDEIGEYSGARKEIRPVTIATYQVLTTKRKGAYAHLDLLDARDWGL
VVYDEVHLLPAPIFRMTADLQARRRLGLTATLVREDGREADVFSLIGPKRFDAPWKDIEA
QGYIAPADCVEVRVSLPESQRLAYAVSEPEDRYRLASCSDAKLPVVEKLAKQHAGEPTLV
IGQYLDQLHEVAERLGAEVITGETTVKERQRLYDAFRTGEVTTLVVSKVANFSIDLPEAS
VAIQISGTFGSRQEEAQRLGRVLRPKGDGRTAHFYTIVSRDTVDADFAAHRQRFLAEQGY
AYRIVDADDL
NT seq
1653 nt
NT seq
+upstream
nt +downstream
nt
atgaatgacggacccctgatcgtccagagcgacaagaccctcctcctcgaggtcgaccac
ccgagcgccgaggcggctcggcgcgccatcgcgccgttcgccgagctcgagcgcgccccc
gagcacgtgcacacctaccggatcacccccctcggcctgtggaacgcccgcgccgctggg
cacgacgccgagcaggtcgtcgacgccctcatgacgcacagcaggtatgccgtcccgaac
gccctgctcgtcgacgtggccgacacgatggaccgctacggccgcctgaccctcgagaag
gaggggctcgccgactccgaggagggcacccggctcgtgctgcgcacgacggaccgcccg
gtgctcgaggaggtgctgcggcacaagaagatcaagccgctgacgggcgagcgtctcgac
gacctggccgtcgtcgtgcacccgagcgagcgcggcaccctcaagcaggagctgctcaag
atcggctggcccgccgaggacctcgccggctacgtcgacggcgaggcgcacccgatcgac
ctccagcaggacggctggcacctgcggccctaccagcagcacgccgtcgacggcttctgg
cacggcggctcgggcgtcgtcgtgctcccctgcggcgcgggcaagacgctcgtcggcgcg
ggcgcgatggccgcggccaaggcgacgacgctcatcctcgtcaccaacaccgtcagcgcg
cggcagtggaaggacgagctgctcaagcgcaccacgctgaccgaggacgagatcggcgag
tactccggcgcccgcaaggagatccgtcccgtcaccatcgcgacctaccaggtgctgacg
acgaagcggaagggcgcctacgcccacctcgacctgctcgacgcgcgcgactggggcctc
gtggtctacgacgaggtgcacctgctgccggcgccgatcttccgcatgacggccgacctg
caggcgcgccgccggctcggcctgacggcgaccctcgtgcgcgaggacggccgcgaggcc
gacgtcttcagcctcatcggcccgaagcgcttcgacgcgccgtggaaggacatcgaggcg
cagggctacatcgctcccgccgactgcgtggaggtgcgtgtcagcctccccgagagccag
cggctggcgtatgccgtcagcgagcccgaggaccgctaccgtctcgcgtcgtgctcggac
gccaagctgcccgtcgtcgagaagctcgcgaagcagcacgccggtgagccgacgctcgtc
atcgggcagtacctcgaccagctccacgaggtggccgagcggctcggcgccgaggtgatc
accggcgagacgacggtcaaggagcgccagcgcctctacgacgcgttccgcaccggcgag
gtcacgacgctcgtggtcagcaaggtcgcgaacttctccatcgacctgcccgaggccagc
gtcgcgatccagatcagcggcacgttcggctcgcgccaggaggaggcccagcgcctcggc
cgcgtgctgcgccccaagggcgacggacggaccgcgcacttctacacgatcgtgtcgcgc
gacacggtcgacgcggatttcgccgcgcaccgtcagcgcttcctcgccgagcagggctac
gcgtaccggatcgtcgacgccgacgacctctga
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