Terrabacter sp. C0L_2: U5C87_12825
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Entry
U5C87_12825 CDS
T09725
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
ted
Terrabacter sp. C0L_2
Brite
KEGG Orthology (KO) [BR:
ted00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ted03019
]
U5C87_12825 (hrpA)
Enzymes [BR:
ted01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
U5C87_12825 (hrpA)
Messenger RNA biogenesis [BR:
ted03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
U5C87_12825 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_19
AAA_22
nSTAND3
ResIII
AAA_23
SLFN-g3_helicase
NACHT
Flavi_DEAD
ABC_tran
AAA_24
SRP54
TsaE
Herpes_Helicase
AAA_16
Motif
Other DBs
NCBI-ProteinID:
WVM94891
LinkDB
All DBs
Position
2798163..2802098
Genome browser
AA seq
1311 aa
AA seq
DB search
MSDQPANAPARSRPPRRRGRRRPTVQGGGTPSTEQQQARRAARAATVPPITYPEHLPVVE
RRDDIAAAIRDHQVVVIAGETGSGKTTQIPKICLELGRGLDGVIGHTQPRRIAARAVAER
LSEELAVELGSAVGYQVRFTDQSSRDTLVKVMTDGILLAEMQRDRELRRYDTIIIDEAHE
RSLNIDFILGYLKQLLPRRPDLKVIITSATIDPQRFAEHFADPATGEPAPIIEVSGRTFP
VEIRYRPLVDPDRPDAEERDMVTGVCEAVEELWTERHSGTSSDILVFFSGEREIRDAADA
LNGMKLPVTEVVPLYGRLSAAEQHRVFSRHTGRRIVLATNVAETSLTVPGIRYVIDTGTA
RISRYSQRTKVQRLPIEPVSQASANQRSGRCGRVADGIAIRLYSEDDYDSRPEFTDPEIL
RTNLASVILQMTSLGLGDIARFPFVDPPDSRQITDGVRLLEELQAFAPEDDEPATGRGRR
CPGRRLTAYGRTIAALPIDPRHARMVIEADKRGVLREVLVIVAALSIQDPRERPQDKQEL
ANASHKRFADETSDFVTWLNLWAYLKEQQKELSSSAFRRMCKAEFLHYLRIREWQDLHSQ
VKQAAKQAGLDVSRGTVHVGEGEIDADAIHQSLLAGLLSHVGVRDEQKREYAGARGTRFG
ISPGSALFRKQPQFVMAEELVETSRLWARVNARIDPVWAEQLGTHLVKRQYSEPRWSGKR
GSAVATERVTLYGVPLVVGRVVGLGRVDPELARDLFVRHALVEGDWHTEHAFLRDNAALV
ERLGELEARTRRRDIVVDDSTLIAFYDKRIPADVVSGRHFDSWWKKARRQTPDLLTFTEE
LLLRESAGSLADEDHPTTWTQGENVLPVTYQFEPGSAQDGVTVHIPVERLNQVTPDGFDW
QVPGFREELVTALIRSLPKGIRRNLVPAPDHARAVLPELDPTSGPLLVALATVLRRRAGV
AVTPADFDLERVPAHLTVTFQVDGSDGRAVATGKDLEAVRDTATPQLRRQVSRAGSRVEQ
AGLTSFPDAGVPETFESAQGVQGFPALVDTGSAVDLRVLPTRAEADAEHRLGVRRLLLLG
ITPPWKQILARLTNTQKLALGHNPHGSVPALLDDCLAAAVDAIRDDAVTDREDHAVRSRE
DFEWALSAVRTHTTAKVVQVVGLVEPILAKHLALTNRLAELDRSSSPAIRPMLADVRAQL
GELVRPGFVADTGLRRLPDLDRYLRAIAHRLDKAPANLTRDAQALDQVDLVEGRYADLLE
SLRPAQRGAAEIVDIGWMIEELRVSLFAQTVGTAYSVSPQRILKAIAKVAA
NT seq
3936 nt
NT seq
+upstream
nt +downstream
nt
atgtccgaccagcccgcgaacgccccggcacgttcgcggccaccccggcgtcgcggccgc
cgccggccgaccgtgcagggtgggggcactccgtcgaccgagcagcagcaggcccgtcgc
gccgcccgcgccgccacggtcccgccgatcacctatccggagcacctgccggtcgtcgag
cggcgcgacgacatcgccgccgcgatccgcgaccaccaggtcgtcgtcatcgcgggggag
accgggtcgggcaagacgacccagatccccaagatctgcctcgagctcggccgcgggctc
gacggcgtcatcggccacacccagccgaggcgcatcgcagcgcgtgccgtcgccgagcgc
ctctccgaggagctggccgtcgagctcggcagcgccgtcggctaccaggtgcgcttcacc
gaccagagcagccgcgacaccctcgtcaaggtcatgaccgacggcatcctgctcgccgag
atgcagcgtgaccgcgagctgcggcgctacgacacgatcatcatcgacgaggcccacgag
cgcagcctcaacatcgacttcatcctcggctacctcaagcagctgctgccgcgccggccc
gacctcaaggtcatcatcacctcggcgacgatcgacccgcagcgcttcgccgagcacttc
gccgacccggccacgggcgagccggccccgatcatcgaggtctccggccgcaccttcccc
gtcgagatccgctaccgcccgctcgtcgaccccgaccgccccgacgcggaggagcgcgac
atggtgaccggtgtctgcgaggccgtcgaggagctgtggaccgagcggcactccggcacg
agcagcgacatcctcgtcttcttctccggcgagcgggagatccgtgacgcggcggacgcg
ctcaacgggatgaagctgcccgtcacggaggtcgtcccgctctacggccggctgtccgcc
gcggagcagcaccgcgtcttctcgaggcacaccggtcgacgcatcgtcctggccaccaac
gtcgccgagacctcgctcaccgtgccgggcatccgctacgtcatcgacaccggcacggcg
cgcatcagccgctacagccagcgcaccaaggtccagcgcctgcccatcgagccggtcagc
caggcgtcggccaaccagcgctcgggccgctgtggccgcgtcgccgacggcatcgcgatc
cggctctactccgaggacgactacgacagccgccccgagttcaccgaccccgagatcctg
cgcaccaacctcgcctcggtcatcctccagatgacgagcctcgggctcggcgacatcgcg
cgcttcccgttcgtcgacccgccggacagccgccagatcaccgacggcgtgcgcctgctc
gaggagctgcaggccttcgctcccgaggacgacgagcccgccaccgggcgagggaggcga
tgtccgggacgccgcctcacggcatacggccgcaccatcgcggcgctgccgatcgacccg
cgccacgcccgcatggtcatcgaggccgacaagcgcggcgtgctgcgcgaggtgctcgtc
atcgtcgcggcgctgtcgatccaggacccgcgcgagcggccgcaggacaagcaggagctc
gccaacgcctcgcacaagcgcttcgccgacgagacgagcgacttcgtcacgtggctgaac
ctgtgggcctacctcaaggaacagcagaaggagctgagcagcagcgccttccgccggatg
tgcaaggcggagttcctccactacctgcgcatccgcgagtggcaggacctccacagccag
gtcaagcaggccgccaagcaggccggtctcgacgtcagccgcggcaccgtccacgtcggc
gagggtgagatcgacgcggacgccatccaccagtcgctgctcgccgggctcctgtcgcac
gtcggtgtccgtgacgagcagaagcgggagtatgccggggcgcgcggcactcgcttcggc
atcagtcccgggtcggcgctcttccgcaagcagccccagttcgtcatggccgaggagctc
gtcgagacgagccgcctgtgggcgcgcgtcaacgcgcggatcgacccggtgtgggccgag
cagctgggtacgcacctcgtgaagcggcagtactccgagccgcgctggtcgggcaaacgc
ggctcggccgtcgcgaccgagcgggtcacgctctacggcgtgcctctcgtcgtcggccgc
gtcgtcggcctcggccgcgtcgaccccgagctcgcccgcgacctcttcgtcaggcacgcc
ctcgtcgagggcgactggcacaccgagcacgcgttcctgcgcgacaacgccgccctcgtc
gagcgcctcggcgagctcgaggcccgcacccgtcgccgcgacatcgtcgtcgacgacagc
accctgatcgccttctacgacaagcggatccccgctgacgtcgtgtcggggcgccacttc
gactcgtggtggaagaaggcgcggcgccagacccctgacctgctcaccttcaccgaggag
ctgctgctgcgcgagagcgcgggcagcctcgccgacgaggaccacccgacgacgtggacg
cagggcgagaacgtcctgcccgtgacctaccagttcgagcccgggtcggcccaggacggc
gtgaccgtccacatccccgtcgagcgcctcaaccaggtgaccccggacggcttcgactgg
caggtcccgggcttccgcgaggagctcgtcaccgctctgatccgcagtctccccaagggg
atccgccgcaacctcgtccccgcacctgatcacgctcgtgccgtcctgccggagctcgac
ccgacgtcggggccgctgctcgtggcgctcgccacggtgctgcggcggcgtgccggcgtg
gccgtcacgccggccgacttcgacctcgagcgggtgcccgcgcacctgaccgtcaccttc
caggtcgacgggtccgacggccgcgccgtggcgaccggcaaggacctcgaggccgtgcgc
gacaccgccacgccccagctgcgtcgccaggtcagccgggccggttcgcgcgtcgagcag
gcaggactcacgtcgttccccgacgcgggcgtgcccgagaccttcgagagcgcccagggc
gtccagggcttcccggccctcgtcgacaccgggtcggccgtcgacctccgggtgctgccg
acccgggccgaggccgacgccgagcaccgcctcggcgtgcgccggctgctgctgctcggc
atcaccccgccgtggaagcagatcctcgcccgcctcaccaacacccagaagctcgccctc
ggccacaacccgcacggcagcgtccccgccctgctcgacgactgcctggccgcagcagtc
gacgcaatccgcgacgacgcggtcaccgaccgggaggaccacgcggtgcgcagccgcgag
gacttcgagtgggcactgtcagccgtgcgcacgcacaccacggccaaggtcgtgcaggtc
gtcggcctcgtggagccgatcctcgccaagcacctggcgctgaccaaccggctcgccgag
ctggaccgctcgagcagccccgcgatccggcccatgctcgccgacgtccgcgcgcaattg
ggggagctcgtgcgtcccggcttcgtcgccgacaccggcctgcgccgccttcccgacctc
gaccgctacctgcgcgccatcgcccaccggctcgacaaggccccggccaacctgacccgc
gacgcccaggctctcgaccaggtcgacctcgtcgagggccgctacgccgacctgctcgag
tccctccggcccgcccagcgcggcgcggccgagatcgtcgacatcggctggatgatcgag
gagctgcgggtctcgctcttcgcgcagacggtcggcacggcatacagcgtctccccgcag
cgcatcctcaaggcgatcgccaaggtcgccgcctga
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