Terrabacter sp. C0L_2: U5C87_17525
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Entry
U5C87_17525 CDS
T09725
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
ted
Terrabacter sp. C0L_2
Brite
KEGG Orthology (KO) [BR:
ted00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ted03016
]
U5C87_17525
Enzymes [BR:
ted01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
U5C87_17525
Transfer RNA biogenesis [BR:
ted03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
U5C87_17525
Prokaryotic type
tRNA splicing ligases
U5C87_17525
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
WVM95784
LinkDB
All DBs
Position
complement(3798929..3800137)
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AA seq
402 aa
AA seq
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MTTLPVALPGAQASTLMWADPDEVETAALDQLRNISRLPWVHGLRVMPDVHLGKGATVGS
VIAMRDAVSTAAVGVDIGCGMTGVRTNLTAADLPDDLGPLRSAIESVLPVGWNANDGSAP
VLARDAGLAGRFDTLMGRFAELRAPKIADRANRAAAQCGSLGSGNHFWEVCERDDGHLWL
MLHSGSRNIGKELAERHIATAKTLEHNLGLPDRDLAVFLAGTGEMAAYLHDLYWAQEYAL
LNREVMMATTREVVRTHFPSVVFDEPVRCHHNYVSEETYDGVDVVVTRKGAIRAAAGDLG
LIPGSMGTGSYVVRGLGNEASFNSASHGAGRRMSRNAAKRRFTVEDLRAQTAGIECRKDA
GVIDEIPSAYKDLESVIAAQTTGPSPLVEVVARLTTLLCVKG
NT seq
1209 nt
NT seq
+upstream
nt +downstream
nt
atgaccaccttgcctgtcgcgctcccgggcgcgcaggcctccacgctgatgtgggccgat
cccgacgaggtcgagacggccgcgctggaccagctgcgcaacatcagcaggctgccctgg
gtgcacggcctgcgcgtcatgccggacgtccacctcggcaagggcgccaccgtcggctcg
gtcatcgccatgcgcgacgccgtgtcgaccgccgcggtcggcgtcgacatcggctgcggc
atgaccggcgtccggaccaacctgacggctgccgacctgcccgacgacctcggccccctg
cggtcggcgattgagtcggtgctgcccgtcggctggaacgccaacgacggctcggcgccc
gtgctcgcgcgcgacgccgggctggctggtcgcttcgacacgctcatggggcggttcgcc
gagctgcgtgcgccgaagatcgctgaccgggcgaatcgtgctgcggcgcagtgcggttca
ctgggcagtggcaaccacttctgggaggtctgcgagcgcgacgacggccacctgtggctc
atgctgcactcgggctcgcgcaacatcggcaaggagctcgcggagcggcacatcgccacg
gccaagacgctcgagcacaacctcgggctgcccgatcgtgacctcgcggtcttcctcgcc
gggacgggcgagatggcggcgtacctccacgacctgtactgggcgcaggagtacgccctg
ctcaaccgcgaggtgatgatggcgacgacgcgtgaggtcgtgcgcacgcacttcccgagc
gtcgtgttcgacgagccggtgcgctgccaccacaactacgtgtcggaggagacctacgac
ggggtggacgtcgtcgtgacgcggaagggggcgatccgggccgcggccggcgacctcggc
ctcatccccggctcgatgggcacgggctcctacgtcgtccgcggcctgggcaacgaggcg
tcgttcaactccgcgagccacggcgcgggccgccggatgtcgcgcaacgcggccaagcgt
cggttcacggtcgaggacctgcgggcgcagacggccggcatcgagtgccgtaaggacgcc
ggggtcatcgacgagatcccctcggcctacaaggatctcgagtcggtgatcgcggcgcag
acgaccgggccgagcccgctcgtcgaggtcgtggcgcggctgacgacgctgctctgtgtc
aaggggtag
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