Terrabacter sp. C0L_2: U5C87_20015
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Entry
U5C87_20015 CDS
T09725
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
ted
Terrabacter sp. C0L_2
Pathway
ted03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ted00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
U5C87_20015 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ted03021
]
U5C87_20015 (rho)
03019 Messenger RNA biogenesis [BR:
ted03019
]
U5C87_20015 (rho)
Transcription machinery [BR:
ted03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
U5C87_20015 (rho)
Messenger RNA biogenesis [BR:
ted03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
U5C87_20015 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATP-synt_ab
Rho_RNA_bind
Rho_N
AAA_25
NACHT
SAP
S1CSD-TOTE-2
Motif
Other DBs
NCBI-ProteinID:
WVM96262
LinkDB
All DBs
Position
complement(4299513..4301765)
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AA seq
750 aa
AA seq
DB search
MSETTTRPLSGLSAMKLDELKGIASSMGITGTTKMRKSDLVEAIKARQSGGSSAPATPAA
SSASAPASGAADAAAPAQAAPARASRRVSRPAGSATTTEAQTEAPAEAPSTTSAESAESV
PTAERADETAQERAPRSERATRGSRAARADEQDTSSRQRAEGGDESTGDSGDAGDRSSRQ
RDRAQQGGRQQGERQQGNRGDRQQNDRQADRANDRQADRGNDRQADRANDRQADRGNDRQ
ADRANDRQADRANDRGQQPERHADRDQQGNRGDRQQNDRQQNDRQQPRQQDRQQDRQQDR
QQDRQQDRQQGDGNDQNRGQQSGYDDDGGSRRSRNRQRSRDRKRGRGREGGQDWNDQDLQ
VGDDDVLVPVGGILDVLDNYAFVRTSGYLAGPNDVYVPLGIVKKNGLRKGDAVTGAVKAL
RDGEQPSGSVGRQKFNALVRLDTVNGQTPEEAAKRVEFGKLTPLYPQQRLRLETEPNVLT
TRIIDLVAPIGKGQRGLIVAPAKAGKTMIMQTLANAITTNNPECHLMVVLVDERPEEVTD
MQRAVKGEVISSTFDRPAEDHTTVAELAIERAKRLVELGHDVVVLLDSITKLGRAYNLAA
PASGRILSGGVDSAALYPPKKFFGAARNIENGGSLTILATALVETGSKMDEVIFEEFKGT
GNMELRLSRDLANRRIFPAVDINSSGTRREEILLASEELKIMWKLRRVLGGLDAQQAIEL
LIDRLKKTRTNYEFLTQVQATSSSRLDDES
NT seq
2253 nt
NT seq
+upstream
nt +downstream
nt
gtgtcagaaacaaccacccgtccgctctccggcctgtcggccatgaagctggacgagctc
aagggcattgcgtcgtcgatgggcatcaccgggacgacgaagatgcgcaagagcgacctc
gtcgaggcgatcaaggctcgacagtccggcggttcgtcggctccggcgaccccggcggcc
tcgagcgcctcggcccccgcgtccggtgcggccgacgccgccgcccctgcgcaggccgcc
ccggctcgcgcctcgcgccgggtcagccgtcccgccggttcggcgacgacgaccgaggcc
cagaccgaggcgcccgccgaggctccgtccaccacgagcgccgagagcgccgagagcgtc
ccgaccgccgagcgtgccgacgagacggcgcaggagcgggctccccgttccgagcgcgcg
acgcgcggttcgcgtgcggcccgcgccgacgagcaggacacctcctcgcgccagcgcgcc
gagggcggcgacgagtcgacgggcgactcgggcgacgcgggtgaccgctcgagccggcag
cgcgaccgtgcccagcagggcggtcgccagcagggtgagcgtcagcagggcaaccgcggc
gaccgccagcagaacgaccgtcaggccgaccgcgccaacgaccgtcaggccgaccgcggc
aacgaccgtcaggccgaccgcgccaacgaccgtcaggccgaccgcggcaacgaccgtcag
gccgaccgcgccaacgaccgtcaggccgaccgcgccaacgaccgcggccagcagcccgag
cgccacgcggaccgcgaccagcagggcaaccgcggcgaccgccagcagaacgaccgccag
cagaacgaccgccagcagccgcgacagcaggaccgccagcaggaccgtcagcaggaccgt
cagcaggaccgccagcaggaccgccagcagggtgacggcaacgaccagaaccgcggccag
cagtcggggtacgacgacgacggcggcagccgtcgcagccgcaaccgccagcgcagccgg
gaccgcaagcgcggtcgtggccgcgagggcggtcaggactggaacgaccaggacctccag
gtcggtgacgacgacgtgctcgtgcccgtcggcggcatcctcgacgtgctcgacaactac
gcgttcgtccgcacgtccggctacctcgccggcccgaacgacgtctacgtgccgctcggc
atcgtcaagaagaacggcctgcgcaagggcgacgccgtgaccggtgccgtcaaggcgctg
cgggacggcgagcagccctcgggcagcgtggggcgccagaagttcaacgcgctcgtccgg
ctcgacactgtcaacgggcagacgcctgaggaggccgccaagcgcgtcgagttcggcaag
ctgacgccgctctacccgcagcagcgcctgcggctcgagaccgagcccaacgtgctgacg
acgcggatcatcgacctcgtcgccccgatcggcaagggccagcgcggcctcatcgtcgcc
ccggccaaggccggcaagacgatgatcatgcagaccctcgccaacgcgatcacgacgaac
aaccccgagtgccacctcatggtcgtcctcgtcgacgagcgccccgaggaggtcaccgac
atgcagcgcgccgtcaagggcgaggtcatctcctcgaccttcgaccggccggccgaggac
cacacgacggtcgccgagctcgccatcgagcgggccaagcgtctcgtcgagctgggtcac
gacgtcgtcgtgctgctcgactcgatcaccaagctcggtcgtgcctacaacctcgccgcc
ccggcgagcgggcgcatcctctcgggcggcgtcgactcggccgcgctctacccgccgaag
aagttcttcggcgcggcgcgcaacatcgagaacggtggctcgctcaccatcctcgcgacc
gccctcgtcgagaccggctcgaagatggacgaggtgatcttcgaggagttcaagggcacc
ggcaacatggagctgcgcctcagccgcgacctggccaaccgtcgcatcttccccgccgtc
gacatcaacagctccggcacgcgccgcgaggagatccttctcgcgagcgaggaactgaag
atcatgtggaagctgcgtcgggtccttggcggcctcgacgcgcagcaggccatcgagctg
ctcatcgaccgtctcaagaagacgcggaccaactacgagttcctcacgcaggtgcaggcg
acgagcagctcacggctcgacgacgagtcctga
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