KEGG   Terrabacter sp. C0L_2: U5C87_20015
Entry
U5C87_20015       CDS       T09725                                 
Symbol
rho
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
ted  Terrabacter sp. C0L_2
Pathway
ted03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ted00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    U5C87_20015 (rho)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ted03021]
    U5C87_20015 (rho)
   03019 Messenger RNA biogenesis [BR:ted03019]
    U5C87_20015 (rho)
Transcription machinery [BR:ted03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     U5C87_20015 (rho)
Messenger RNA biogenesis [BR:ted03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     U5C87_20015 (rho)
SSDB
Motif
Pfam: ATP-synt_ab Rho_RNA_bind Rho_N AAA_25 NACHT SAP S1CSD-TOTE-2
Other DBs
NCBI-ProteinID: WVM96262
LinkDB
Position
complement(4299513..4301765)
AA seq 750 aa
MSETTTRPLSGLSAMKLDELKGIASSMGITGTTKMRKSDLVEAIKARQSGGSSAPATPAA
SSASAPASGAADAAAPAQAAPARASRRVSRPAGSATTTEAQTEAPAEAPSTTSAESAESV
PTAERADETAQERAPRSERATRGSRAARADEQDTSSRQRAEGGDESTGDSGDAGDRSSRQ
RDRAQQGGRQQGERQQGNRGDRQQNDRQADRANDRQADRGNDRQADRANDRQADRGNDRQ
ADRANDRQADRANDRGQQPERHADRDQQGNRGDRQQNDRQQNDRQQPRQQDRQQDRQQDR
QQDRQQDRQQGDGNDQNRGQQSGYDDDGGSRRSRNRQRSRDRKRGRGREGGQDWNDQDLQ
VGDDDVLVPVGGILDVLDNYAFVRTSGYLAGPNDVYVPLGIVKKNGLRKGDAVTGAVKAL
RDGEQPSGSVGRQKFNALVRLDTVNGQTPEEAAKRVEFGKLTPLYPQQRLRLETEPNVLT
TRIIDLVAPIGKGQRGLIVAPAKAGKTMIMQTLANAITTNNPECHLMVVLVDERPEEVTD
MQRAVKGEVISSTFDRPAEDHTTVAELAIERAKRLVELGHDVVVLLDSITKLGRAYNLAA
PASGRILSGGVDSAALYPPKKFFGAARNIENGGSLTILATALVETGSKMDEVIFEEFKGT
GNMELRLSRDLANRRIFPAVDINSSGTRREEILLASEELKIMWKLRRVLGGLDAQQAIEL
LIDRLKKTRTNYEFLTQVQATSSSRLDDES
NT seq 2253 nt   +upstreamnt  +downstreamnt
gtgtcagaaacaaccacccgtccgctctccggcctgtcggccatgaagctggacgagctc
aagggcattgcgtcgtcgatgggcatcaccgggacgacgaagatgcgcaagagcgacctc
gtcgaggcgatcaaggctcgacagtccggcggttcgtcggctccggcgaccccggcggcc
tcgagcgcctcggcccccgcgtccggtgcggccgacgccgccgcccctgcgcaggccgcc
ccggctcgcgcctcgcgccgggtcagccgtcccgccggttcggcgacgacgaccgaggcc
cagaccgaggcgcccgccgaggctccgtccaccacgagcgccgagagcgccgagagcgtc
ccgaccgccgagcgtgccgacgagacggcgcaggagcgggctccccgttccgagcgcgcg
acgcgcggttcgcgtgcggcccgcgccgacgagcaggacacctcctcgcgccagcgcgcc
gagggcggcgacgagtcgacgggcgactcgggcgacgcgggtgaccgctcgagccggcag
cgcgaccgtgcccagcagggcggtcgccagcagggtgagcgtcagcagggcaaccgcggc
gaccgccagcagaacgaccgtcaggccgaccgcgccaacgaccgtcaggccgaccgcggc
aacgaccgtcaggccgaccgcgccaacgaccgtcaggccgaccgcggcaacgaccgtcag
gccgaccgcgccaacgaccgtcaggccgaccgcgccaacgaccgcggccagcagcccgag
cgccacgcggaccgcgaccagcagggcaaccgcggcgaccgccagcagaacgaccgccag
cagaacgaccgccagcagccgcgacagcaggaccgccagcaggaccgtcagcaggaccgt
cagcaggaccgccagcaggaccgccagcagggtgacggcaacgaccagaaccgcggccag
cagtcggggtacgacgacgacggcggcagccgtcgcagccgcaaccgccagcgcagccgg
gaccgcaagcgcggtcgtggccgcgagggcggtcaggactggaacgaccaggacctccag
gtcggtgacgacgacgtgctcgtgcccgtcggcggcatcctcgacgtgctcgacaactac
gcgttcgtccgcacgtccggctacctcgccggcccgaacgacgtctacgtgccgctcggc
atcgtcaagaagaacggcctgcgcaagggcgacgccgtgaccggtgccgtcaaggcgctg
cgggacggcgagcagccctcgggcagcgtggggcgccagaagttcaacgcgctcgtccgg
ctcgacactgtcaacgggcagacgcctgaggaggccgccaagcgcgtcgagttcggcaag
ctgacgccgctctacccgcagcagcgcctgcggctcgagaccgagcccaacgtgctgacg
acgcggatcatcgacctcgtcgccccgatcggcaagggccagcgcggcctcatcgtcgcc
ccggccaaggccggcaagacgatgatcatgcagaccctcgccaacgcgatcacgacgaac
aaccccgagtgccacctcatggtcgtcctcgtcgacgagcgccccgaggaggtcaccgac
atgcagcgcgccgtcaagggcgaggtcatctcctcgaccttcgaccggccggccgaggac
cacacgacggtcgccgagctcgccatcgagcgggccaagcgtctcgtcgagctgggtcac
gacgtcgtcgtgctgctcgactcgatcaccaagctcggtcgtgcctacaacctcgccgcc
ccggcgagcgggcgcatcctctcgggcggcgtcgactcggccgcgctctacccgccgaag
aagttcttcggcgcggcgcgcaacatcgagaacggtggctcgctcaccatcctcgcgacc
gccctcgtcgagaccggctcgaagatggacgaggtgatcttcgaggagttcaagggcacc
ggcaacatggagctgcgcctcagccgcgacctggccaaccgtcgcatcttccccgccgtc
gacatcaacagctccggcacgcgccgcgaggagatccttctcgcgagcgaggaactgaag
atcatgtggaagctgcgtcgggtccttggcggcctcgacgcgcagcaggccatcgagctg
ctcatcgaccgtctcaagaagacgcggaccaactacgagttcctcacgcaggtgcaggcg
acgagcagctcacggctcgacgacgagtcctga

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