Terrabacter sp. C0L_2: U5C87_20545
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Entry
U5C87_20545 CDS
T09725
Name
(GenBank) UvrD-helicase domain-containing protein
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
ted
Terrabacter sp. C0L_2
Pathway
ted03420
Nucleotide excision repair
ted03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ted00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
U5C87_20545
03430 Mismatch repair
U5C87_20545
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ted03400
]
U5C87_20545
Enzymes [BR:
ted01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
U5C87_20545
DNA repair and recombination proteins [BR:
ted03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
U5C87_20545
MMR (mismatch excision repair)
Other MMR factors
U5C87_20545
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PDDEXK_1
AAA_30
UvrD_C_2
AAA_22
DEAD
Motif
Other DBs
NCBI-ProteinID:
WVM96363
LinkDB
All DBs
Position
complement(4416009..4419458)
Genome browser
AA seq
1149 aa
AA seq
DB search
MTTVEATPATSRGEGVQHSALDIATALEMPPPTVEQAAVIEAGARPLLVVAGAGSGKTET
MAARVVWLVANGLVDPDQVLGLTFTRKAAAELSQRIAKRLRGLERAGIWTPPADDGAGAE
VLGGTPTVSTYHAYAGRLVREHALRVGIEPEFRILTEAGAWQLAAEAVSRWDGPMDDVVK
SEATVIQAVMALAGEMAEHVRTPAEVMEHLDLVLARLDALPDGDGRGSLTAARDAITVLR
ERRTVLPIVEAFLALKRERESLDFADQMAIAARLTRSVEAVGQIERERFRAVLLDEFQDT
SEAQLELLRSLFHHPGVALTAVGDPNQSIYGWRGASATTLLRFPSEFASDAGPADVLPLS
TSWRNDALILDAANAVAAPLATEHVQPLRPRPGAGPGSIEVARLETAEEEAEHVAGWIAS
HWFSPSGRRTGRSAAVLCRRRSTFPVVLEALRRRALPVEVVGLGGLLVTPEVSDLVAALW
VVQDPTRGDQLMRLLTGPVVRLGAADLAGLWAWARELHSRTSRATPPGTPARGPDAPEAA
QTSGTSATPGTPEAPEVGDAAATDRRGSDLAADSADTATLVEALDDLPRPGWTARDGAHI
GDEALARLHGLGEVVRRLRRLTALPLVDLVAEAEIAIGLDIEVLSRPEHTASTARVHLDA
FADVAARYATTADRPTLSGFLSWLDAARDQERGLDAGHTESDADAVQVLTVHAAKGLEWD
VVAVPTLVEGVFPAHGATAVAPVPDSDPTAYACSGDVKDKGWLIGLDSLPYDLRGDRAGL
PHLDWRGVPDRKALSAAIDAFVLDGGRHAVAEERRLAYVALTRARSSMLLTTYLWGAAKK
TMSVPSRFMTEVEDTLPSAVVRTTWVAAPEPVIDDKGKASAPTNPHLAVPISQLWPHDPM
GARRAGLLDAHRRIAALVEAGPTVPQGDPRVDDLRILLAEQAARRSGGEPVVDVPRHLSA
SAVVSLARDAEAFAMSLRRPMPSPPAVAARQGTAFHAWIEEHYSRAAFVDLLDLPGSADE
GAADDGDLDAMKERFLASEWADRIPEEIELSIETIIDGIAVRGRVDAVFPRDDGGWTVVD
WKTGARPTGRDASVRALQLGAYAVAFARLRGVEPSRVDAAFYYAGEGVTVRPDLPGESVL
ADLLRTLPD
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
gtgacgaccgtcgaggccacgccggccaccagtcgcggcgagggcgtgcagcacagtgcg
ctcgacatcgcgaccgccctcgagatgccaccgcccacggttgagcaggcagccgtcatc
gaggcgggcgcccgaccgctgctcgtggtcgccggcgctggttcgggcaagaccgagacg
atggccgcgcgcgtcgtctggctcgtcgccaacggtctcgtcgaccccgaccaggtgctc
ggcctcaccttcacccgcaaggccgcggccgagctctcgcagcgcatcgccaagcgactg
cgcgggctcgagcgcgccggcatctggacgccacccgccgacgacggcgcgggcgccgag
gtgctcggcggcacgcccaccgtctccacctaccacgcgtatgccggtcgcctcgtccgt
gagcacgcgctccgggtgggcatcgagccggagttccgcatcctcaccgaggccggtgcc
tggcagctggccgccgaggcggtgtcgcggtgggacggtcccatggacgacgtcgtcaag
agcgaggccaccgtcatccaggccgtcatggcgctcgccggcgagatggccgagcacgtg
cgcaccccggccgaggtcatggagcacctcgacctcgtgctcgcccggctcgacgcgctg
cccgacggcgacgggcgcggctcgctcacggccgctcgcgacgcgatcacggtgctgcgc
gagcggcgcaccgtcctgcccatcgtcgaggcgttcctcgcgctcaagcgcgagcgcgag
tcgctcgacttcgccgaccagatggccatcgcggcacgcctgacccgctcggtcgaggcg
gtcgggcagatcgagcgggagcgcttccgtgccgtgctgctcgacgagttccaggacacc
tccgaggcccagctcgagctgctgcgctcgctcttccaccaccccggcgtcgcgctcacc
gcggtgggcgaccccaaccagtccatctacggctggcgcggcgccagtgccacgacgctg
ctgcgattcccctcggagttcgcgagcgacgccggcccggccgacgtcctgccgctgtcg
acgagctggcgcaacgacgccctcatcctcgacgcggccaacgccgtcgcagcgccgctc
gccacggagcacgtgcagccgctccggccccgacctggcgcgggccccggatccatcgag
gtggctcggctcgagaccgccgaggaggaggccgagcacgtcgccgggtggatcgcgtcg
cactggttcagccccagtggtcgacgcaccggacgcagcgcagccgtgctctgccgtcga
cgctcgaccttccccgtcgtgctcgaggcactgcgccgacgcgcgctccccgtggaggtc
gtcggcctcggcggtctgctcgtgacccccgaggtcagcgacctcgtcgccgccctctgg
gtcgtgcaggacccgacccgcggcgaccagctgatgcgactgctcacggggcccgtggtg
cggctgggtgccgccgacctcgcgggcctctgggcatgggcgcgggagctgcactcccgc
acctcccgcgccaccccacccggcacacccgctcgcggtccggacgcgccggaggcggct
cagacctccgggacgtctgcaacacccgggacgcccgaggcgccggaggtcggggacgcc
gcggccaccgaccgacgcggctccgacctcgctgccgacagcgccgacacggccactctc
gtcgaggccctcgacgacctgccccgcccgggctggaccgcgcgcgacggcgcgcacatc
ggtgacgaggccctggcccgcctgcacggcctcggtgaggtcgtccgtcggctgcgccgg
ctcacggccctcccgctcgtcgacctcgtcgccgaggccgagatcgccatcggactcgac
atcgaggtgctctctcgacccgagcacaccgcctcgacggcccgggtgcacctcgacgcc
ttcgccgacgtcgccgcgcgctacgccacgaccgccgaccgtcccacgctctcaggcttc
ctcagctggctcgacgccgcacgggaccaggagcgtggcctcgacgcgggacacaccgag
tccgacgcggacgccgtccaggtcctcaccgtccacgccgccaaggggctcgagtgggac
gtcgtcgccgtccccaccctcgtcgagggagtcttccccgcccacggcgcgacggccgtt
gccccggtccccgacagcgaccccacggcgtacgcctgctccggcgacgtcaaggacaag
ggttggctcatcgggctcgactcgctgccctacgacctgcgcggtgaccgtgccgggctg
ccgcacctcgactggcggggcgtcccggaccgcaaggcgctcagcgcggccatcgacgcg
ttcgtcctcgacggcgggcgccacgccgtcgcggaggagcgccggctcgcctacgtcgcc
ctgacccgcgcacgttcctcaatgctgctgacgacctatctctggggtgccgcgaagaag
acgatgtcggtcccgtcgcgcttcatgacggaggtcgaggacacgctgccctcagccgtc
gtacgcacgacctgggtcgccgcgcccgagcccgtcatcgacgacaagggcaaggcgagc
gcacccaccaacccgcacctcgccgtgccgatctcgcagctgtggccccacgaccccatg
ggtgcacgtcgcgccggactgctcgacgcccatcgccgcatcgcggctctggtcgaggcg
ggcccgactgtgccgcagggtgatccacgggtcgacgacctgcgcatcctgctcgcggag
caggccgcgcgccggtccggaggcgagcccgtggtcgacgtccctcgccacctgtcggcg
tcggccgtcgtgtcgctggcccgcgacgccgaggccttcgcgatgtccttgcgccgtccc
atgcccagcccgccggccgttgcggcccggcagggcaccgcgttccacgcgtggatcgag
gagcactactcgcgcgccgccttcgtcgacctgctagacctgcccggcagcgccgacgag
ggggcggctgacgacggcgacctcgacgcaatgaaggagcgcttcctcgccagcgagtgg
gcggaccgcatccccgaggagatcgagctgtcgatcgagacgatcatcgacggtatcgcc
gtgcgtggccgggtcgatgccgtcttcccgcgcgacgacggtggctggacggtcgtcgac
tggaagaccggtgcccggccgaccggacgcgacgcctccgtccgcgccctgcagctcggg
gcgtatgccgtcgccttcgcccgcctgcgcggcgtcgagccgtcgcgcgtcgacgcggcg
ttctactacgcgggggagggcgtcacggtgcgacccgacctgcccggcgagtccgtcctg
gccgacctgctgcgcaccctgcccgactag
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