Nostocoides sp. HKS02: GKE56_02385
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Entry
GKE56_02385 CDS
T06295
Name
(GenBank) RNase J family beta-CASP ribonuclease
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
teh
Nostocoides sp. HKS02
Pathway
teh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
teh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GKE56_02385
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
teh03019
]
GKE56_02385
Messenger RNA biogenesis [BR:
teh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
GKE56_02385
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
Lactamase_B_6
Motif
Other DBs
NCBI-ProteinID:
QGN56927
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Position
510627..512312
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AA seq
561 aa
AA seq
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MSHPHPELTAPPKLAPHGVRIIALGGLGEVGRNMAVIEHAGQLLIIDCGVLFPEDHHPGV
DLILPDFEYIENRLDDIQAIVLTHGHEDHIGAVPYLLKLKPDIPIVGSMLTLALIEAKLK
EHRIRPYTLGVKEGMRERLGVFDCEFVAVNHSIPDALAVFVRTPGGTILHTGDFKMDQLP
LDGRLTDLRAFARLGEEGVDLFMTDSTNAEVPGFTTPERDIAPAIDKVFRDAERRIIVAC
FSSHVHRVQQVLDAAEKAGRKVAMVGRSMVRNMGIAAELGYLHVPDGVLVDVKKLGNLPD
RQVVLICTGSQGEPMAALSRMANRDHRIEVGDGDTVLMASSLIPGNENAVYRVINGLMRL
GADVVHKGNAKVHVSGHASAGELLYCYNIVKPRNVMPVHGEWRHLVANGKLAEQTGVPRA
QVVLAEDGVVVDLVDGVASIVGAVPCGYIYVDGSSVGEFDEALLKDRRILRDEGFVSVIV
VMDAATGKIAAGPEITARGFAEDDEIFNQVRPKIEQALAEATGNGVTDSYQLEQVMRRAV
GSWVGGKIRRRPMIIPVVIQA
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
gtgagccatccccatcccgagctgacggccccgccgaagctcgcgccccacggcgtgcgc
atcatcgccctcggcggcctcggcgaggtcggccgcaacatggcggtcatcgagcacgcc
ggccagctgctcatcatcgactgcggagtgctgttccctgaggaccaccatccgggggtc
gacctcatcctgccggacttcgagtacatcgagaaccggctcgacgacatccaggccatc
gtgctgacccacggccacgaggaccacatcggtgccgtgccctacctgctcaagctcaag
cccgacatccccatcgtcgggtcgatgctgaccctggccctgatcgaggccaagctcaag
gagcaccgcatccggccctacacgctgggtgtcaaggagggcatgcgggagcggctcggg
gtgttcgactgcgagttcgtcgcggtcaaccactcgattcccgacgcgctcgccgtcttc
gtgcgcacgcccgggggcacgatcctgcacaccggcgacttcaagatggaccagctcccg
ctcgacgggcgcctgaccgacctgcgcgccttcgcccgactcggggaggagggcgtggac
ctgttcatgaccgactcgaccaacgccgaggtcccggggttcaccactcccgagcgtgac
atcgcgccggccatcgacaaggtgttccgcgacgccgagcgccgcatcatcgtggcctgc
ttctccagccacgtgcaccgcgtccagcaggtgctcgacgccgccgagaaggccggtcgc
aaggtcgccatggtgggccgctcgatggtgcgcaacatggggatcgcggccgagctgggc
tacctgcacgtgcccgacggcgtgctcgtcgacgtcaagaagctcggcaacctcccggac
cggcaggtcgtcctcatctgcaccgggtcccagggtgagccgatggccgcgctctcacgc
atggccaaccgcgaccaccgcatcgaggtcggcgacggtgacaccgtcctcatggcgtcc
tccctgatcccgggcaacgagaacgccgtctaccgcgtcatcaacggcctcatgcggctc
ggggccgacgtcgtccacaagggcaacgccaaggtccacgtctcgggtcacgccagtgcc
ggcgagctgctctactgctacaacatcgtcaagccccgcaacgtcatgccggtgcacggc
gaatggcgccacctcgtggccaacggcaagctcgcggagcagaccggcgtcccgcgcgca
caggtggtcctggccgaggacggtgtcgtggtcgacctggtcgacggtgtggcgagcatc
gtcggcgccgtcccctgcggctacatctacgtcgacgggtcctcggtgggcgagttcgac
gaggccctgctcaaggaccgccgcatcctgcgcgacgagggtttcgtctcggtcatcgtc
gtcatggatgccgcgaccggcaagatcgcggccggccccgagatcaccgcccgcggcttc
gccgaggacgacgagatcttcaaccaggtccgacccaagatcgagcaggccctggccgag
gccacgggcaacggcgtcaccgactcctaccagctcgagcaggtcatgcgtcgcgcggtc
ggcagctgggtcggcggcaagatccgtcgccgtccgatgatcatcccggtggtcatccag
gcgtga
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