Nostocoides sp. HKS02: GKE56_07535
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Entry
GKE56_07535 CDS
T06295
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
teh
Nostocoides sp. HKS02
Pathway
teh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
teh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GKE56_07535
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
teh03019
]
GKE56_07535
03009 Ribosome biogenesis [BR:
teh03009
]
GKE56_07535
Enzymes [BR:
teh01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
GKE56_07535
Messenger RNA biogenesis [BR:
teh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
GKE56_07535
Ribosome biogenesis [BR:
teh03009
]
Prokaryotic type
rRNA processing factors
GKE56_07535
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
S1
DnaJ_CXXCXGXG
MJ1673
Motif
Other DBs
NCBI-ProteinID:
QGN57751
LinkDB
All DBs
Position
complement(1586585..1589446)
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AA seq
953 aa
AA seq
DB search
MASTEDLFQSTETTATGDADAPREASVGDESTGGAPAPARKRARRATKKASAPAPVSAPT
ADDPTPEPTDAAASAPKVAEKKAAKKTAKKTARKAATKRASTKGATAPEAPVEEVDGVEA
TGEPNEPNEPNEPEASQQPPAVPSFGLLFQAPDVAAAAPARSARRATRKAAAPAGPAGER
AAETAGEKPATREEPAAEPEDLETDHPTDDLDSDTSEAGRRRRRRGGKGRGRGRGGAEDS
SGDAKDSSGGGQDASASGAEPQDRDAEGDDSGHGPDSEADSDFDGDGTSTRRRRRRRRGG
SAAENDDPPGTVTKVREARRDEPQSVKGSTRLEAKKQRRREGREAGRRRTIITEAEFLAR
RESVERVMVVRERGGKTQIGVLEDGVLVEHYVSRETNASMAGNVYLGRVQNVLPSMEAAF
VDIGKGRNAVLYAGEVNWDASGLENNQPKRIENALKSGDSVLVQVTKDPIGHKGARLTSQ
ISLPGRYLVYVPEGSMTGISRKLPDTERSRLKGILKEVVPDSAGVIVRTAAEGASEDELR
ADVERLTKTWEKIAQKAESKSKAKGGAPVLVHGEPDLTVRVIRDVFNEDFTSLVVAGDQA
YAEVSEYLGDVAPDLAERLQKWTSQEDLFTHHRVDEQIAKAMDRKVWLPSGGSLVIDRTE
AMTVVDVNTGKFVGSGGNLEETVTKNNIEAAEEIVRQLRLRDIGGIIVIDFIDMVLESNR
DLVVRRLLECLGRDRTKHQVAEVTSLGLVQMTRKRVGSGLIEVFSETCEHCGGRGIIVHA
DPVERSSGGDGGSGGGGANQGGTGQARTGRGRRGRAVASAAPAEPSAPAHGGPTPAQIAA
AAHAAALKSTSDHHDDEHDEHGSIDSFGHADRYDGTDLDEATVTPVTAADTTSTPASSTP
PVTPVTPADTTSTPASSTPKRRKRGRVVAPAGPPRPVTDGADTTPAEATSDAS
NT seq
2862 nt
NT seq
+upstream
nt +downstream
nt
atggcatccacagaagacctgttccagtccaccgagacgaccgccaccggcgacgccgac
gctcctcgcgaggcgagcgtgggcgacgagtccaccggcggtgcccctgcgcccgcccga
aagcgcgcccgacgcgccaccaagaaggcctcggctccggccccggtctccgcgccgacc
gcggacgacccgaccccggagcccaccgacgccgcggcgtccgccccgaaggttgccgaa
aagaaggcggccaagaagacggcgaagaagaccgcgaggaaggccgccacgaagcgggcg
agcacgaagggcgccaccgcgcccgaggcgccggtggaggaggtcgacggcgtcgaggcc
acgggggagccgaacgagccgaacgagccgaacgagcccgaggcgtcgcagcagccgccc
gccgtacccagcttcggtctgctgttccaggcccccgacgtcgccgccgccgcgcctgcg
cggtccgcgcgccgggccacccgcaaggcggccgctccggcagggccggccggcgagcgg
gcagccgagacggctggggagaagcctgcgacgcgcgaggagcctgcggcggagccggag
gacctcgagaccgaccacccgaccgatgacctcgactccgacacgtccgaggccggtcgc
cgtcgccgtcgccgcggcggcaagggccgcggccgtggtcgcggtggcgcggaggactcc
agcggagacgccaaggactccagcgggggtggccaggacgccagcgcgtccggcgccgag
ccccaggaccgggacgccgagggcgacgactccggccacggccccgactccgaggccgac
tccgacttcgacggcgacggcacctcgacccggcgtcgtcgtcgtcgccgccgcggcggt
tccgccgccgagaacgacgacccgcccggcaccgtgaccaaggtccgcgaggcgcgccgt
gacgagccccagagcgtcaagggctccacgcgcctcgaggccaagaagcagcgccgccgc
gagggccgcgaggccggtcgccgccgcacgatcatcaccgaggccgagttcctcgcccgt
cgggagagcgtcgagcgggtcatggtcgtgcgcgagcgcggtggcaagacccagatcggc
gtgctcgaggacggcgtgctcgtggagcactacgtgtcccgcgagaccaacgcgtcgatg
gccggcaacgtctacctcggccgcgtccagaacgtcctgccgtcgatggaggccgccttc
gtcgacatcggcaagggccgcaacgccgtgctgtacgccggtgaggtcaactgggacgcc
tcgggcctggagaacaaccagcccaagcgcatcgagaacgccctgaagtcgggcgactcg
gtgctcgtccaggtgaccaaggacccgatcggccacaagggcgctcgcctcacgagccag
atctcgctgcccggccgctacctcgtctacgtgcccgagggctcgatgacgggcatctcc
cgcaagctccccgacaccgagcgcagccgcctgaagggcatcctcaaggaggtcgtgccc
gacagcgccggggtcatcgtgcgcaccgcggccgagggggccagcgaggacgagctgcgc
gccgacgtcgaacgcctcaccaagacgtgggagaagatcgcgcagaaggccgagtcgaag
tccaaggcgaagggcggcgcgcccgtcctcgtccacggggagccggacctcaccgtccgc
gtcatccgggacgtgttcaacgaggacttcacctcgctggtggtcgccggtgaccaggcg
tatgccgaggtcagcgagtacctcggcgatgtcgcccccgacctcgcggagcgcctccag
aagtggacctcgcaggaggacctcttcacccaccaccgggtcgacgagcagatcgccaag
gcgatggaccgcaaggtctggctgccctcgggtggctcgctcgtgatcgaccgcaccgag
gccatgacggtcgtcgacgtaaacaccggcaagttcgtcggctcgggcggcaacctcgag
gagacggtcaccaagaacaacatcgaggcggccgaggagatcgtgcgccagctccggctg
cgcgacatcggcggcatcatcgtcatcgacttcatcgacatggtcctggagtccaaccgc
gacctcgtcgtgcggcggctgctcgagtgcctgggccgggaccgcaccaagcaccaggtc
gccgaggtcacctcgctcggcctggtccagatgacccgtaagcgggtcggctccgggctg
atcgaggtcttctccgagacctgcgagcactgcgggggtcgcggcatcatcgtccacgcc
gacccggtggagcggtcctccggtggagacggtggtagcggtggtggtggcgccaaccag
ggtgggaccggacaggcccgcaccggccgcggtcgtcgcgggcgtgcagtcgccagcgct
gcgcccgccgagccgagcgcgcccgcgcacggcggaccgactccggcgcagatcgccgcg
gcggcgcacgctgcggccctgaagtcgaccagcgaccaccacgacgacgagcacgacgag
cacggttcgatcgactcgttcgggcacgcggaccgctacgacggcaccgacctcgacgag
gcgacggtcacgccggtcacggcagccgacacgaccagcacgccggccagctcgacgccc
ccggtcacgccggtcacgccagccgacacgaccagcacgccggccagctcgacgccgaag
cgccgcaagcgaggccgggtggtggcccctgccggaccgccgcgtccggtcacggacggg
gcggacaccaccccggcagaagcgacgtcggacgcgtcctga
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