Tessaracoccus palaemonis: KDB89_04975
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Entry
KDB89_04975 CDS
T08695
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
tej
Tessaracoccus palaemonis
Pathway
tej03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tej00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KDB89_04975
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tej03019
]
KDB89_04975
03009 Ribosome biogenesis [BR:
tej03009
]
KDB89_04975
Enzymes [BR:
tej01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
KDB89_04975
Messenger RNA biogenesis [BR:
tej03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
KDB89_04975
Ribosome biogenesis [BR:
tej03009
]
Prokaryotic type
rRNA processing factors
KDB89_04975
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
TFIIF_alpha
Motif
Other DBs
NCBI-ProteinID:
QXT63823
LinkDB
All DBs
Position
1124143..1126896
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AA seq
917 aa
AA seq
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MLDTENGPENTTPTTPTRRRRAAARPAGAPVKVEAPAQPEVTVQPEIAQAEVPAQPEAPA
VEASAAAPEEDLTPKRRRASTRVAEPAGRRRRVQVADETPAADQAEAPADTAPEAPADDA
PAEPVKKPARRRATRQSAPAEKAPAPETPAAVEAPAPEVVAEPVVEEAPAVVAEPAETKP
ARRRRAASRPAAAPEPAAAPEPVEAPAVDEAAAAPEAAVTPEPEVAPEPVPEAEPTREAP
RARRRRAARPAAAPEPASDADESDPIGAALREAEKLAEARKAVLADPFMTAEARAAELAA
LAGAIAGDDDEDEDEEAAEADTDEESTDAEEADDSEENEDEDADAEESDARPSRRRRRRG
GRRRRRSDSRDDSEGEQGDDADENGESSDEQGADTDAEGEPDGEAESSDEGGSTTRRRRR
RRRRGEGESHGTGDDEITGIEGSTRMEAKRQRRKESRAAGRRRAPILSEAEFLARRESVD
RRLLIRQKEEYTQLAVIEDDILVEHYVDKASATSLIGNIYLGKVQNVLPSMEAAFIDIGR
GRNAVLYAGEVDWASFNVSGEDRKVEKVLKSGQSVLVQVTKDPVGAKGARLTAHISLPGR
YIVYSPGGHLSGISRKLPDTERHRLRTVLGNLISDEESVIVRTAAEGVSEDELVRDVNRL
KAQWEVIEKKSKQGGAPEALYSEPDLTLRIVRDLFTEDFGHLIVQGNGSQEDSYEAIAAY
VDHVAPHLKDRLEQFEVGDDGRDLFAQYKVDDQIAKALDRKVYLPSGGSLVIDRTEAMTV
IDVNTGRFTGSAGNLEATVTSNNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLPSNRDLLL
RRLVECLGRDRTRHQVAEVTSLGLVQLTRKKIGTGLAEAFTEPCEHCHGAGYLRFDEPVD
SQAPADGGERKPRRRRK
NT seq
2754 nt
NT seq
+upstream
nt +downstream
nt
atgctcgacacggaaaacggtccggaaaacacaacaccgaccacccccacccgtcgccgc
agggcagccgcccgcccggccggggcccccgtcaaggtcgaggcccccgcccagccagag
gtcaccgtgcagcccgagatcgcgcaggccgaggtcccggcacagcccgaggcccccgcg
gtcgaggcgtccgccgcggcccccgaggaggacctcaccccgaagcgtcgccgcgccagc
acccgggtcgccgagcccgccggccgccgtcgtcgcgtgcaggtcgccgacgagacccct
gccgcagatcaggccgaggcccccgcggacacggcgcccgaggccccggccgacgacgcc
cccgccgagcccgtgaagaagcccgcgcgtcgtcgcgccacccgccagagcgcccccgcc
gagaaggcgcctgcaccggaaacccccgccgccgtcgaggcgccggcccccgaggtcgtg
gccgagcctgtcgtggaggaggcccccgctgtcgtcgccgagcccgcggagacgaagccg
gcccgtcgccgtcgcgccgcttcccgccccgccgcggccccggagcccgccgcggccccg
gagcccgtcgaggcacccgccgtcgacgaggccgccgcggcgcccgaggccgccgtcacc
ccggagcccgaggtcgcccccgagccggtgcccgaggccgaacccacccgcgaggcgccc
cgcgcccggcgtcgccgcgcggcgcgacccgccgcagcccccgagcccgcctccgacgcg
gacgagtccgatcccatcggcgccgcgctgcgcgaggccgagaagctcgccgaggcgcgc
aaggccgtgctcgccgacccgttcatgacggccgaggcccgcgcggccgagctggccgcg
ctcgccggggccatcgccggcgacgacgatgaggacgaggacgaggaggccgccgaggcc
gacaccgacgaggagtccacggacgccgaggaggcggatgactccgaggagaacgaggac
gaggacgccgacgccgaggagtcggacgcgcgcccgtcgcgccgtcgccgccgccgtggc
ggccgccgtcgccgccgctccgactcccgcgacgacagcgagggcgagcagggcgacgac
gcggacgagaacggcgagtcctccgacgagcagggcgccgacaccgacgccgagggcgag
cccgacggcgaggccgagtcttccgatgagggcggctcgaccacgcgtcgccgtcgccgc
cgtcgccgtcgtggcgagggtgagtcccacggcaccggcgacgacgagatcaccggcatc
gagggatcgacccgcatggaggccaagcggcagcgccgcaaggagtcccgcgccgccggc
cgacgccgcgccccgatcctcagcgaggccgagttcctggcccgacgcgagtccgtcgac
cgtcgcctcctcatccgccagaaggaggagtacacccagctggcggtcatcgaggacgac
atcctggtggagcactacgtcgacaaggcgtctgccacgtcgctgatcggcaacatctac
ctcggcaaggtgcagaacgtgctgccgagcatggaggccgccttcatcgacatcggccgc
ggccgtaacgccgtgctgtacgcgggcgaggtcgactgggcctccttcaacgtctccggc
gaggaccgcaaggtcgagaaggtcctcaagtccggccagagcgtcctcgtgcaggtcacg
aaggaccccgtcggcgcgaagggtgcccgcctcacggcgcacatctccctgcccggccgc
tacatcgtctactcgccgggcggccacctgtccggcatctcccgcaagctgcccgacacc
gagcgccaccgcctgcgcacggtgctcggcaacctgatctccgacgaggagtccgtgatc
gtgcggacggccgccgagggcgtcagcgaggacgagctggtacgcgacgtcaaccggctc
aaggcccagtgggaggtcatcgagaagaagtccaagcagggcggcgccccggaggccctc
tactcggagcccgacctcaccctgcggatcgtccgtgacctgttcacggaggacttcggg
cacctgatcgtccagggcaacggctcgcaggaggactcctacgaggccatcgccgcctac
gtggaccatgtcgccccgcacctgaaggaccgcctcgagcagttcgaggtcggcgacgac
ggccgcgacctgttcgcgcagtacaaggtcgacgaccagatcgccaaggcgctcgaccgc
aaggtctacctcccgtcgggcggctcgctggtcatcgaccgcaccgaggccatgaccgtc
atcgacgtcaacaccggccgcttcaccggctcggctggcaatctcgaggccaccgtcacc
tccaacaacctggaggcggccgaggagatcgtccgacagctgaggctccgcgacatcggc
ggcatcatcgtgatcgacttcatcgacatggtgctcccgagcaaccgtgacctgctgctg
cgtcgtctcgtcgagtgcctcggccgcgaccggacccgccaccaggtcgccgaggtcacg
agcctcggtctggtccagctgacccgcaagaagatcggcacggggctggcggaggccttc
accgagccgtgcgagcactgccacggggccgggtacctgcgcttcgacgagcccgtcgac
tcgcaggcccccgcagacggtggcgagcgcaagccccgtcgccgcaggaagtga
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