Terrisporobacter hibernicus: JW646_11015
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Entry
JW646_11015 CDS
T07658
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
tem
Terrisporobacter hibernicus
Pathway
tem03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tem00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JW646_11015
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tem03019
]
JW646_11015
03009 Ribosome biogenesis [BR:
tem03009
]
JW646_11015
Enzymes [BR:
tem01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
JW646_11015
Messenger RNA biogenesis [BR:
tem03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
JW646_11015
Ribosome biogenesis [BR:
tem03009
]
Prokaryotic type
rRNA helicases
JW646_11015
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
VWA_2
Motif
Other DBs
NCBI-ProteinID:
UEL46183
UniProt:
A0AAX2ZAB3
LinkDB
All DBs
Position
2230999..2232666
Genome browser
AA seq
555 aa
AA seq
DB search
MNTIKFEDLPISEEIKRSVAELGFEEPSPIQVQSIPVILTGKDVIGQAQTGTGKTAAFSI
PVLDMVDPNKKSVQAVVLCPTRELAIQVSSEMKKLGKYKSGIKTLPVYGGQPIDRQIKSL
KSGVQVVIGTPGRVIDHINRRTLKMDEVKMLVLDEADEMLDMGFREDIELILEQTPAERQ
TTFFSATMSKPILELTKKYQDDPQLIKIVRKELTVPNIKQYYIETRRANKLEVLCRLIDV
YNPKLSVVFCNTKRGSDELVSELQARGYFADALHGDLKQTQRDIVMDKFRQGTIDILVAT
DVAARGIDVDDVEAVFNYDLPQDEEYYVHRIGRTGRAGREGISFSFVFGKEVRKMKDIER
YTKSKLVRHDIPTIADVEEKKVTAFFKQVKETIKESNLSKQTQWLENLCEEEGLEVIEIA
AALVKLALGDEEKAEIIEEKSSYRDESGRRGRKDRDRGERGDRSDRKRSRSAEAGMVRLF
INVGKNQRVQAKDIVGAIAGEAGIPGKLVGTIDIYDKYTFVEVPKENSKNVLDKMKNIKI
KGNKINIEKANTRRK
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
atgaatacaataaaatttgaagatttaccaataagtgaagaaataaaaagatcagtggcg
gaactaggatttgaggagccatctccgattcaagttcagtctataccagtaattttaaca
ggaaaagatgttataggacaagcgcaaacgggaacaggaaagacggcagctttctctata
ccagtgttagacatggtggatcctaacaaaaaaagtgtacaggcagtagtattatgtcct
acaagagaacttgcgattcaagtttctagtgaaatgaaaaaattaggtaaatataaaagt
ggaataaagacacttccagtttacggcggacaaccaatagatagacaaataaaatcatta
aagagcggagtacaagtagtaataggaacaccaggacgtgttatagaccatataaatcgt
agaactttaaaaatggacgaagtgaaaatgttagttcttgatgaagcggatgaaatgtta
gatatgggattcagagaagatattgagttaatattagaacaaactccagctgaaagacaa
acgactttcttctcagcgacaatgtcgaaacctatattagaattaactaaaaaataccaa
gatgatcctcagttaataaaaatagtaagaaaagaattaactgtaccaaatataaaacaa
tactatatagaaacaagaagagctaataaattagaagtattatgtagattaatagatgta
tataatccaaaattatcagtagtattttgtaatacaaaaagaggatctgatgagttagtt
agtgaattacaagcaagaggatattttgcagatgctcttcatggagatttaaagcaaact
caaagagatatagtaatggataaattcagacaaggtacaatagatatacttgttgctaca
gatgttgcagctagaggtatagatgttgatgatgttgaagctgtatttaactatgacctt
ccacaagacgaagaatactatgtacacagaatcggtagaacaggtcgtgctggtagagaa
ggtatatctttctcatttgtatttggaaaagaagtaagaaaaatgaaagatatcgaaaga
tatacaaaatctaaattagttagacatgatataccaacaatagctgatgttgaagaaaag
aaagtaactgcattcttcaaacaagttaaagaaacaataaaagaaagtaacttatcaaag
caaacacaatggctagaaaatctttgtgaagaagaaggattagaagttatagaaatagca
gcagctcttgttaaacttgcgttaggtgacgaagagaaagcagaaataatagaagaaaag
tcaagctacagagatgagtctggaagaagaggacgtaaagacagagatagaggcgaaaga
ggcgacagaagcgatagaaaacgtagtagaagtgctgaagctggaatggtaagattattt
atcaacgttggtaaaaaccaaagagtacaagctaaagatattgttggagcaatagctgga
gaagcaggaattccaggtaaattagttggaacaatagacatatatgacaaatatacattt
gtagaagttccaaaggaaaattctaaaaatgtattagataaaatgaaaaatataaaaatt
aaaggtaataaaattaatatagaaaaagccaatacaagaagaaaataa
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