Tunturiibacter empetritectus: RBB75_12550
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Entry
RBB75_12550 CDS
T10212
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
temp Tunturiibacter empetritectus
Pathway
temp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
temp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RBB75_12550
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
temp03019
]
RBB75_12550
Messenger RNA biogenesis [BR:
temp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
RBB75_12550
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
Lactamase_B_6
Motif
Other DBs
NCBI-ProteinID:
XCB25281
UniProt:
A0AAU7Z9Y5
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Position
complement(3067759..3069426)
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AA seq
555 aa
AA seq
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MAQDKLKMIPLGGLGEFGMNCMAIRWQDDIIVIDAGLMFPEEELLGVDIVVPDISYLTEN
REKVRAILLTHGHEDHIGGLPWILSELNVPVYGTEFTLAYVEGKLEEHRLLDDADLNEMI
PGHRITLGPFSIMPIRVTHSLVDCVALAIHTPVGVVLHTGDFKIDLSPPDNKPFDLHAFA
ELGKQGVLALLQDSTNVDRNGYTPSERAVRPKLDEIFSQTKKKLFFSCFSSSIHRIRLAM
ELAHEHGRKVAVIGRSLDNSTEIAQDLGYLDLPQGLVINPGQIRDFPANKLLIMISGTQG
EPMSALSRAAVNNHKFAHIDAGDTVLLSSRVIPGNEKSIYRMIDHLERRDAKVIHDDGQS
GLIHVSGHGSQEELRLMINLVRPKFFIPIHGDYRHLKRHAELAGSMGVVEKTILMEDGDV
LELDKGSATKTGKVTVGRVCIDSGGTSTDVVEDIVIRDRKHLSEDGIVLPIIAINKQTGL
LENPPEIVIRGMAIATEEGLITEARQVVQRTLEGSSAEEKADYGVIKEKIRNDLKRYIQK
STSRRPLIMPVILEI
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
atggcacaagataaattgaagatgattccgctgggtggccttggtgagttcggtatgaac
tgcatggcgatccgctggcaggatgacattattgtcatcgacgccggtctgatgtttcct
gaagaagagttgctgggtgtggacattgttgtccctgatatcagctatttgactgaaaac
cgcgagaaggttcgcgcgatccttttgacgcatgggcatgaagaccacattggcggactg
ccgtggattctgtctgagttgaacgttccggtatatgggacggagtttacgctggcgtat
gttgagggcaagctggaagagcaccggctgctggatgacgcggatttgaacgagatgatt
cccgggcatcggattacgctggggccgttttcgatcatgccgatccgggtgacgcactcg
ctggtggactgcgtggcactggcgattcatacgccggtgggcgtggtgctgcatacgggc
gacttcaagattgatctttcgccaccggataacaagccgttcgatctgcatgcgtttgcc
gagctgggcaagcagggcgtgctggcgctgttgcaggactcgaccaacgtggaccgcaat
gggtatacgccgagtgagcgggctgtgcggccgaagctggatgagattttttcgcagacg
aagaagaagcttttcttcagctgcttttcgtcttcgattcatcggattcggctggcgatg
gagctggcgcatgagcatgggcgcaaggttgcggtgatagggcggtcgctggataactcg
actgagattgcgcaggatcttgggtatctcgatctgccgcagggtctggtgatcaatcca
gggcagattcgtgattttcctgcgaataaattgctgatcatgatcagcggcacgcagggt
gagccgatgagtgcgttgagccgggcggcggtaaataatcacaagttcgcgcatatcgat
gcgggtgatacggtgctgctgagttcgcgggtgattccggggaatgagaagtctatctac
cggatgatcgatcacctggagcggcgcgatgcgaaggtgattcatgacgatgggcagtcg
ggtctgatccacgtgagcggacatgggagccaggaggagctgaggttgatgattaatctc
gttcgtccgaaattcttcattccgatccatggagactatcgccatctgaagcgtcatgcg
gagctggcagggtcgatgggcgtggtggagaagacgattctgatggaggacggcgacgtt
ctggagctggataagggctcggctacgaagaccgggaaggttacggttgggcgagtttgc
atcgattcgggtggaacctcgaccgacgtggtggaagacatcgtcattcgcgaccggaaa
catttgagcgaggatgggattgtgctgccgattatcgcgatcaacaagcagacgggattg
ctcgagaatccgcctgagattgtgattcgcggtatggcgatcgcgaccgaagagggtttg
atcactgaagcgcgacaggtggtgcagcggactcttgagggatcttccgcggaagagaag
gccgactacggcgtgatcaaggagaagattcgcaacgatctgaagcggtatatccagaag
agcacgagtcggcggcctttgatcatgccggtgattctggagatttga
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