KEGG   Tunturiibacter empetritectus: RBB75_12550
Entry
RBB75_12550       CDS       T10212                                 
Name
(GenBank) ribonuclease J
  KO
K12574  ribonuclease J [EC:3.1.-.-]
Organism
temp  Tunturiibacter empetritectus
Pathway
temp03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:temp00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    RBB75_12550
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:temp03019]
    RBB75_12550
Messenger RNA biogenesis [BR:temp03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     RBB75_12550
SSDB
Motif
Pfam: RNase_J_b_CASP RNase_J_C Lactamase_B RMMBL Lactamase_B_2 Anti-Pycsar_Apyc1 Lactamase_B_6
Other DBs
NCBI-ProteinID: XCB25281
UniProt: A0AAU7Z9Y5
LinkDB
Position
complement(3067759..3069426)
AA seq 555 aa
MAQDKLKMIPLGGLGEFGMNCMAIRWQDDIIVIDAGLMFPEEELLGVDIVVPDISYLTEN
REKVRAILLTHGHEDHIGGLPWILSELNVPVYGTEFTLAYVEGKLEEHRLLDDADLNEMI
PGHRITLGPFSIMPIRVTHSLVDCVALAIHTPVGVVLHTGDFKIDLSPPDNKPFDLHAFA
ELGKQGVLALLQDSTNVDRNGYTPSERAVRPKLDEIFSQTKKKLFFSCFSSSIHRIRLAM
ELAHEHGRKVAVIGRSLDNSTEIAQDLGYLDLPQGLVINPGQIRDFPANKLLIMISGTQG
EPMSALSRAAVNNHKFAHIDAGDTVLLSSRVIPGNEKSIYRMIDHLERRDAKVIHDDGQS
GLIHVSGHGSQEELRLMINLVRPKFFIPIHGDYRHLKRHAELAGSMGVVEKTILMEDGDV
LELDKGSATKTGKVTVGRVCIDSGGTSTDVVEDIVIRDRKHLSEDGIVLPIIAINKQTGL
LENPPEIVIRGMAIATEEGLITEARQVVQRTLEGSSAEEKADYGVIKEKIRNDLKRYIQK
STSRRPLIMPVILEI
NT seq 1668 nt   +upstreamnt  +downstreamnt
atggcacaagataaattgaagatgattccgctgggtggccttggtgagttcggtatgaac
tgcatggcgatccgctggcaggatgacattattgtcatcgacgccggtctgatgtttcct
gaagaagagttgctgggtgtggacattgttgtccctgatatcagctatttgactgaaaac
cgcgagaaggttcgcgcgatccttttgacgcatgggcatgaagaccacattggcggactg
ccgtggattctgtctgagttgaacgttccggtatatgggacggagtttacgctggcgtat
gttgagggcaagctggaagagcaccggctgctggatgacgcggatttgaacgagatgatt
cccgggcatcggattacgctggggccgttttcgatcatgccgatccgggtgacgcactcg
ctggtggactgcgtggcactggcgattcatacgccggtgggcgtggtgctgcatacgggc
gacttcaagattgatctttcgccaccggataacaagccgttcgatctgcatgcgtttgcc
gagctgggcaagcagggcgtgctggcgctgttgcaggactcgaccaacgtggaccgcaat
gggtatacgccgagtgagcgggctgtgcggccgaagctggatgagattttttcgcagacg
aagaagaagcttttcttcagctgcttttcgtcttcgattcatcggattcggctggcgatg
gagctggcgcatgagcatgggcgcaaggttgcggtgatagggcggtcgctggataactcg
actgagattgcgcaggatcttgggtatctcgatctgccgcagggtctggtgatcaatcca
gggcagattcgtgattttcctgcgaataaattgctgatcatgatcagcggcacgcagggt
gagccgatgagtgcgttgagccgggcggcggtaaataatcacaagttcgcgcatatcgat
gcgggtgatacggtgctgctgagttcgcgggtgattccggggaatgagaagtctatctac
cggatgatcgatcacctggagcggcgcgatgcgaaggtgattcatgacgatgggcagtcg
ggtctgatccacgtgagcggacatgggagccaggaggagctgaggttgatgattaatctc
gttcgtccgaaattcttcattccgatccatggagactatcgccatctgaagcgtcatgcg
gagctggcagggtcgatgggcgtggtggagaagacgattctgatggaggacggcgacgtt
ctggagctggataagggctcggctacgaagaccgggaaggttacggttgggcgagtttgc
atcgattcgggtggaacctcgaccgacgtggtggaagacatcgtcattcgcgaccggaaa
catttgagcgaggatgggattgtgctgccgattatcgcgatcaacaagcagacgggattg
ctcgagaatccgcctgagattgtgattcgcggtatggcgatcgcgaccgaagagggtttg
atcactgaagcgcgacaggtggtgcagcggactcttgagggatcttccgcggaagagaag
gccgactacggcgtgatcaaggagaagattcgcaacgatctgaagcggtatatccagaag
agcacgagtcggcggcctttgatcatgccggtgattctggagatttga

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