| Entry |
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| Symbol |
rpoB
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| Name |
(GenBank) DNA-directed RNA polymerase subunit beta
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| KO |
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| Organism |
temp Tunturiibacter empetritectus
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| Pathway |
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| Brite |
KEGG Orthology (KO) [BR:temp00001]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
RBB75_13930 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:temp03021]
RBB75_13930 (rpoB)
03400 DNA repair and recombination proteins [BR:temp03400]
RBB75_13930 (rpoB)
Enzymes [BR:temp01000]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
RBB75_13930 (rpoB)
Transcription machinery [BR:temp03021]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
RBB75_13930 (rpoB)
DNA repair and recombination proteins [BR:temp03400]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
RBB75_13930 (rpoB)
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| SSDB |
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| Motif |
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| Other DBs |
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| LinkDB |
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| Position |
3395886..3400373
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| AA seq |
1495 aa
MSGESNNSEMRAIRSRLDFSKIPTSIQIPNLIEVQRRSYERFLQMDKLPQEREDNGLQSV
FTSVFPITDFRNVSELEFVDFSIGNWECKCGYLKGLNHLRTACTNCGHMVITDPFHPGDV
LCNFCGTYNKNTPDFCTKCGDPVGLQLKYDQAECEERGMTYSAPLKVTIRLKIYDKDPET
GVKSLRDMKEQEVFFGDIPLMSQNGTFIVNGTERVIVSQLHRSPGVFFETANNRTYFLGK
IIPYRGSWVEFEYDQKNTLYVRIDRKRKFLGTIFLRALGLRTDEEILKTFYTVDTINVAD
GKLHWKVVPEGQLSNLQGTRPAHAVTVKGEEIAPATRKISAHTMKGLRSHKIDSVEVETS
EFDGAMTAADVVDLTTGELLYEANQELTADKLHKIIQSGVTSIEVFFPERDDVGNIITNT
LRRDSVRKPEEALIEIYRKLRPGDPPTLDTATALFEGMFFDPRKYDFSRVGRLKFNIKLY
ENQDPSGLDKRTLTPEDFYGTIRYLLKLRKNIGVVDDIDHLGNRRVRAVGELMENQFRIG
LVRMERAIKEKMSVYQEMSTAMPHDLINAKPVMAAIREFFGSSQLSQFMDQTNPLSEITH
KRRLSALGPGGLSRERAGFEVRDVHPTHYGRICPIETPEGPNIGLISSLSCFARINEYGF
IESPYRRVKEGRALDYVSVSNAGESGLRQGDYLEIEEARAKNAELKKAGKRTMDLAPFSF
YLSAWEEDRHTIAQANIELDEKLNIVQDVVDARRQGNFVLVNKSEVDYVDVSPKQLVSVA
ASLVPFLEHDDANRALMGANMQRQSVPLLVAEAPFVGTGMEGVTARDSGAVILAKRNGII
DSVDSERIIVRVEGEHHPTQLSREVGSDIYQLTKFKRSNQNTCINQKPIVRKGDRVIKGQ
VIADGPCTEQGELGLGRNVLVAFMPWRGYNFEDAILISEKLVREDYYTSIHIEEFEIEAR
DTKLGPEEITRDIPNVSEHALRDLDDSGIIRIGAKIGHNDILVGKVTPKGETQLTPEEKL
LRAIFGEKAGDVRDASLTCPPGIEGTVVDVRIFSRKGQEKDERAKQIEQEMIEKLERNLA
DEIRILTDERLKRLEAILGAKEVLADLHDERTNKKLLNKGDILDRDTIELISTRNLKRIR
YADKDPRVNEQIDEIEEMTSRQIDVLRKITNEKISKMQKGDELSPGVIKMVKVYIAMKRK
LSVGDKMAGRHGNKGVIARILPEEDMPYLPDGTPVEIVLNPLGVPSRMNVGQILETHLGW
AAHTLGAQIAELAATMESANEVRELFKARFAGTAALNQLLDLDDEQTLRIAAGMKRGIWF
GTAVFDGARETEIKALLKAAGLPSSGKSQLYDGMIGEPFEQPATVGYIYMLKLSHLVDDK
IHARSIGPYSLITQQPLGGKAQFGGQRFGEMEVWALEAYGAAYILQELLTAKSDDVFGRT
KIYEAIVKGEAAIEPGVPESFNVLIRELQSLCLDVELIKQADQKKQPLPAIAAAD |
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| NT seq |
4488 nt +upstreamnt +downstreamnt
atgtctggcgagtccaacaacagcgaaatgcgcgcgatccgaagccgtcttgatttttcc
aagatccccacatccatccagatccctaacctcattgaagtgcagcgccgcagctacgag
cgcttcctgcagatggacaagctcccgcaggagcgcgaagacaacggcctgcagtcggtc
ttcacctcagtcttccccatcaccgacttccgcaacgtctccgagctcgagttcgtcgac
ttctcgatcggcaactgggagtgcaagtgcggctacctcaagggcctcaaccacctgcgc
acggcctgcaccaactgcggccacatggtcatcaccgaccccttccacccgggcgacgtc
ctctgcaacttctgcggaacttacaacaagaacacccctgacttctgcaccaagtgcggc
gaccctgtcggcctgcaactgaagtatgaccaggcagagtgcgaagagcgcggcatgacc
tactctgcacccctcaaggtcaccatccgtcttaagatctacgacaaggaccctgagacc
ggcgtcaagagcctgcgcgacatgaaggaacaggaagtcttcttcggcgacatcccgctg
atgagccagaacggcaccttcatcgtcaatggcaccgagcgcgtcatcgtgtcgcagctc
caccgttcgcccggcgtcttcttcgagaccgcaaacaaccgcacctacttcctcggcaag
atcattccgtaccgcggcagctgggtcgaattcgagtacgaccagaagaacaccctctac
gtccgcatcgaccgcaagcgcaagttcctcggcaccatcttcctgcgcgcgctcggcctg
cgtaccgacgaggagatcctcaagaccttctacaccgtcgacactatcaacgtagccgac
ggcaagctgcactggaaggtcgttcccgaaggtcagctcagcaacctgcagggcacccgt
cccgcgcatgccgtcaccgtcaaaggggaagagatcgctcctgccacacgcaagatctct
gctcacaccatgaagggtctgcgcagccacaagatcgactcggtcgaagttgagaccagc
gagttcgatggcgctatgaccgccgctgacgtggtcgatctcaccaccggcgagttgctc
tacgaagccaaccaggagttgaccgccgacaagctgcacaagatcatccagtccggcgtc
accagcatcgaggtcttcttcccagagcgcgacgacgtgggcaacatcatcaccaacacc
cttcgtcgcgactccgtgcgcaagcctgaggaagctctcatcgagatctaccgcaagctg
cgtcccggcgacccaccgacgctcgacaccgcgactgcgctcttcgaaggtatgttcttc
gatccgcgtaagtacgacttctcgcgcgtcggccgcctcaaattcaacatcaagctctac
gagaaccaggatccgtctggcctcgacaagcgcacgttgacccccgaggacttctacggc
accatccgctatctgctcaagctgcgcaagaacatcggtgtcgtcgacgacatcgaccac
cttggcaaccgccgcgttcgcgccgtcggtgagctgatggagaaccagttccgcatcggc
ctcgtccgtatggagcgcgccatcaaggaaaagatgtcggtctaccaagagatgtcgacc
gcgatgccgcatgacctcatcaacgccaagccagtcatggccgcgattcgtgagttcttc
ggctcctcgcagctctcgcagttcatggaccagaccaaccccctgtcggagatcacgcac
aagcgtcgcctctccgcccttgggcccggtggtctctcccgtgagcgcgccggctttgaa
gtccgcgacgtgcaccccactcactacggccgcatctgcccgattgagacaccggaaggc
ccgaacatcggtctcatctcgtcgctctcctgctttgcgcgcatcaacgaatatggcttc
atcgagtctccctaccgccgcgtgaaggaaggccgtgcgctagactacgtctccgtctcg
aacgccggtgagtccggtctgcgtcaaggcgactacctcgagatcgaagaggcccgcgcc
aagaacgcagagttgaagaaggccggcaagcgcactatggacctcgcccccttcagcttc
tacctctcggcctgggaagaagatcgccacaccatcgcgcaggcgaacatcgagctcgat
gagaagttgaacatcgtgcaggatgtcgtcgacgctcgtcgccaaggcaacttcgtcctc
gtcaacaagtccgaggtggactacgtcgacgtctcgccgaagcagcttgtctcagtagcc
gcatcgcttgtcccgttcctcgagcacgacgacgccaaccgcgctctgatgggtgccaac
atgcaacggcagtcggttcctctgctcgtcgctgaggctccgttcgtcggtaccggtatg
gaaggcgtcaccgcccgcgactccggcgccgtcatcctggccaagcgtaacggcatcatc
gactcagttgactccgagcgcatcatcgtgcgcgtagaaggcgagcaccaccccacgcag
ctctcgcgtgaggtcggctcggacatctatcagctcacgaagttcaagcgctccaaccag
aacacctgcatcaaccaaaaaccgatcgttcgcaagggcgatcgcgtcatcaagggtcag
gtcatcgccgacggtccttgcactgagcagggcgaactcggcctcggccgtaacgttctg
gtcgccttcatgccatggcgtggttacaactttgaggacgcgatccttatctcggagaag
ctggtccgcgaggactactacacctcgatccacatcgaggagttcgagatcgaagcccgc
gacaccaagcttggaccggaagagatcacgcgcgatatccccaacgtcagcgagcacgca
ctgcgcgatctcgatgactcaggcatcatccgcatcggagcgaagatcggtcacaacgac
atcctcgtcggcaaggtaacgccgaagggtgaaactcagctgacgccggaagagaagctt
ctccgcgccatcttcggagaaaaggccggcgatgttcgcgacgcttccctgacgtgccct
ccgggtatcgaaggcactgtcgtcgacgtccgcatcttctcccgcaagggtcaggagaag
gacgagcgcgccaagcagatcgagcaggagatgatcgagaagctcgagcgcaacctcgcc
gacgagattcgtattctcaccgacgaacgtctcaaacgtctcgaagcgatcctgggagcc
aaagaagttttggctgatctccacgatgagcgcaccaacaagaagctgctcaacaagggc
gacatcctcgaccgcgacaccattgagctcatcagcactcgtaacctcaagcgcatccgc
tacgctgacaaggatccgcgtgtgaacgagcagatcgatgagatcgaggagatgacctca
cgtcagatcgatgttctccgcaagatcaccaacgagaagatcagcaagatgcagaagggc
gacgaactctcgcctggtgtcatcaagatggtcaaggtctacatcgccatgaagcgcaag
ctctctgtcggtgacaagatggccggccgccacgggaacaagggtgttatcgcacgaatc
cttcctgaggaagacatgccgtacctccccgatggaacgccggtggagatcgtgctcaac
ccgctcggtgtgccttcgcgtatgaacgtcggtcagatccttgagacacaccttgggtgg
gctgcacacacccttggcgcgcagatcgccgagcttgccgccacgatggagtcggccaac
gaagtccgcgagctcttcaaggcgcgcttcgccggtaccgccgcactcaaccagcttctt
gacctagacgacgagcagactctgcgcattgccgccggcatgaagcgcggtatctggttc
ggcacggcagtcttcgacggtgcacgcgagaccgagatcaaggcgctcctcaaggccgct
ggtctccccagctcgggcaagtcgcagctctacgatggcatgatcggagaacccttcgaa
cagcctgccaccgttggctacatctacatgctcaagctgtcgcaccttgtcgacgacaag
atccacgctcgttccatcggaccgtactcgctcatcactcagcagccgctgggtggtaag
gcgcagttcggcggacagcgcttcggtgagatggaggtctgggcccttgaagcttacggc
gccgcctacatcctgcaggagctgctcaccgccaagtctgacgacgtcttcggccgtacc
aagatctacgaggccatcgtcaagggcgaagctgccatcgagccgggtgttccagagtcc
ttcaacgttcttatccgcgaactgcagtccctctgcctcgacgtcgaactgatcaaacag
gccgaccagaagaagcagccgctgccagccatcgccgcagcagattag |
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