Tenacibaculum todarodis: LPB136_01930
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Entry
LPB136_01930 CDS
T04588
Name
(GenBank) DEAD/DEAH box helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
ten
Tenacibaculum todarodis
Pathway
ten03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ten00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LPB136_01930
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ten03019
]
LPB136_01930
03400 DNA repair and recombination proteins [BR:
ten03400
]
LPB136_01930
Enzymes [BR:
ten01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LPB136_01930
Messenger RNA biogenesis [BR:
ten03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LPB136_01930
DNA repair and recombination proteins [BR:
ten03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
LPB136_01930
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
ACCA_BT
AAA_14
AAA_22
nSTAND_NTPase4
HTH_20
Motif
Other DBs
NCBI-ProteinID:
APG64198
UniProt:
A0A1L3JGD8
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Position
complement(414018..415895)
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AA seq
625 aa
AA seq
DB search
MISPLEILQQYWKHTSFREPQAEIINAVLAKQNTIALLPTGGGKSVCFQVPGVILDGICI
VISPLIALMQDQVEGLQKRGIKATTIPSKSTPDEIVTIFDNLKFGSYKFLYISPERLQSR
LIQQKIKELNVSIIAIDEAHCISEWGHDFRPSYRNISKLRELKPEATTIALTASATKKVL
EDISKSLALEKPKIFKKSFFRDNLAYQIYTIEDKLYRLKQIFTKTTSPAIVYVNSRKKTA
QISNFLNANGFKSSFYNGGLSNIEKQVAFENWMTEKTPIMVATNAFGMGIDKANVKVVVH
YDFPNSIENYLQEAGRAGRNGKKSFAVLLKNANDIRSFKEQTEMSLPSLSEVKEIHKKLY
QNFQIAKGELLETIYDFNFLEFCKKYNFTPSKAATVLTLLVNNGIIEVTNNFAKKSSLLF
NANSSKILNHKSDKHFIKTLLRSYGGLFEQETKINEFILAKKAGITSNQVITNLERLDTE
GLLTYKQATNNSEVKFLQAREDDRTINRNSREITQFLSQKKQKAANIVAFIENDSICRNI
QLLSYFGEKKAAKCKMCDVCLAEQKTKSTISEKEILTLITEKELLSSKEICTFLDADEQD
ILVHLRQLLSEEKLGLNNQNKFYKK
NT seq
1878 nt
NT seq
+upstream
nt +downstream
nt
atgatttctcctttagaaatactacaacaatattggaagcacactagttttagagaaccg
caagcggaaataataaacgctgtattagcaaaacaaaacaccattgctttattgccaact
ggtggcgggaaatctgtttgttttcaggttcctggagttattttagatggaatttgcatt
gttatttctccacttattgcactaatgcaagatcaagttgaaggtttacaaaaacgcgga
attaaagcaactactattccttcaaaaagtacacccgacgaaattgttaccatttttgat
aacttaaaatttggtagttataaattcttatacatttctcctgaacgcctacagtctcgt
ttaattcaacaaaaaataaaagaattaaacgtttctataattgcaattgatgaagcgcat
tgtatttctgaatggggtcacgattttagaccttcctacagaaacattagtaaactaaga
gaattaaaaccagaagctacaactattgccttaacagcttctgcaaccaaaaaggtttta
gaagatatttctaaaagtttggctttagaaaagccaaaaatctttaaaaaatcgtttttt
agagacaatttagcatatcaaatttatacaattgaagataaactgtatcgattaaaacaa
attttcaccaagacaacatctccagcgattgtttatgttaattcaagaaaaaagacagca
caaatttctaattttttaaatgctaacggatttaaaagtagtttttacaacggaggttta
tctaacatagaaaaacaagttgcttttgaaaattggatgactgaaaaaacaccaattatg
gtggcaacaaatgcttttggaatgggaattgacaaagctaatgttaaagttgttgtgcat
tacgattttccgaatagtatagaaaactacctccaagaagcaggaagagccggtagaaat
ggaaaaaaatcttttgcagtattactaaaaaacgcaaatgatattagatcttttaaggaa
caaactgaaatgtcgcttccatctcttagcgaggttaaagaaattcacaaaaaattatac
caaaattttcaaattgcaaaaggagaattattagaaacaatttacgatttcaatttttta
gaattctgcaaaaaatataactttacgccctcaaaagcagcaacagtacttactctttta
gttaacaatggtattattgaagttacaaataactttgcaaaaaaatcttctttgctgttt
aatgcaaatagctctaaaatattaaatcataaatccgacaagcattttattaagacctta
ttaagaagctatggtggcttgtttgagcaagaaactaaaattaacgaatttatattagca
aaaaaagcaggtataacttccaatcaagtaattactaatttagagcgcctggatactgaa
ggtttacttacttacaaacaagcaacaaacaattctgaagttaaattcttacaagcaaga
gaagatgacagaacaataaatagaaattcaagagaaataacacaatttctaagtcagaaa
aagcaaaaagcagcaaatattgtagcatttattgaaaacgactcaatctgcagaaatatt
caactactctcctattttggcgaaaaaaaagctgctaaatgtaaaatgtgtgatgtttgt
ttagcagaacaaaaaacaaaatcaactatttcagaaaaagaaattttaactttaattact
gaaaaagaacttctttcttctaaggaaatatgtacatttttagacgcagatgaacaagac
attttggtacatttgcgacaacttttatccgaagaaaaacttgggttaaataatcagaat
aaattctacaaaaaatga
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