Tenacibaculum todarodis: LPB136_04775
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Entry
LPB136_04775 CDS
T04588
Name
(GenBank) ribonuclease Y
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
ten
Tenacibaculum todarodis
Pathway
ten03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ten00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LPB136_04775
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ten03019
]
LPB136_04775
Messenger RNA biogenesis [BR:
ten03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LPB136_04775
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Paralog
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
KH_PNO1_2nd
HDOD
KH_KhpA-B
DUF5308
KH-I_KHDC4-BBP
Motif
Other DBs
NCBI-ProteinID:
APG64715
UniProt:
A0A1L3JHV0
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All DBs
Position
complement(1074479..1076044)
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AA seq
521 aa
AA seq
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MNEIVLLAVAGIVGIVIGFLIAKMLEKSKSNKLILQTKKEARSILKEANVEAQSIKKDKI
LQAKEKFIELKSEHEKVILTREKKIGDVEKRIRDKESRVSSELDKGTKLNKSLAQKEKDF
DYKLEFLDKKEGELEKMHNRHVDMLEQISGLSADEAKAELVTSLKDEAKSEAMAFIQTSI
EEAKLTAEQEARKVVLGTIQRVGVEQAVENCVSVFNLESDDVKGRIIGREGRNIRALEAA
TGVEIIVDDTPEAIILSCFDSVRREVARLSMHKLVTDGRIHPARIEEVVKKTEKQINQEI
IEVGKRTVIDLGIHGLHPELIKAVGRMKYRSSYGQNLLQHSREVANLCGIMAAEMGLNAK
AAKRAGLLHDIGKVPDTESELPHALLGMQWAEKYGEKPDVCNAIGAHHDEIEMKSLISPI
VQVCDAISGARPGARRQVLDSYIQRLKDLEEIAFGFNGVQKAYAIQAGRELRVMVESAKV
NDTKAAELSFNISQKIQNDMTYPGQVKVTVIRETRAVNVAK
NT seq
1566 nt
NT seq
+upstream
nt +downstream
nt
atgaacgaaatagtacttcttgcagttgcaggaatagttggaatagtaatcggttttttg
attgctaaaatgttagagaaatctaaatctaataaattaatattacaaacaaaaaaggag
gctagaagcatcttaaaagaggcaaatgtagaagctcaatctataaaaaaggataaaata
ttacaagctaaagaaaaatttatagagttaaaatctgagcatgaaaaagtaattttaact
agagaaaagaaaattggtgacgttgaaaaacgtattagagataaagaatctagagtatct
tctgaattagataaaggtacaaaacttaataaatctctagctcaaaaagaaaaagacttc
gattataaattagagtttttagataaaaaagaaggcgagttagaaaaaatgcataatcgt
catgtagatatgcttgagcaaatttctggtttatctgcagatgaagcaaaagcagagtta
gtaacatctttaaaggatgaagcaaaatctgaagcaatggcatttattcaaacttcaatt
gaagaagcaaaattaaccgcagaacaagaagcacgtaaagttgttttaggaactatccaa
agagtaggtgttgagcaagcagttgagaactgtgtatcagtatttaacttagagtcagat
gatgttaaaggacgtattattgggcgagaaggtagaaacatcagagctttagaagctgca
acaggagtagaaattattgtagatgatacaccagaagcaattatactttcttgtttcgat
tctgttcgtagagaagtagcacgtttatcaatgcataaactagttactgatggtagaatt
caccctgcaagaattgaagaagttgttaagaaaactgaaaaacaaataaatcaagagatt
atagaggttggaaaacgtacagttatcgatttaggtattcatggtttacacccagaatta
attaaagctgtaggtagaatgaaatatcgttcttcatacggacaaaacttattacagcac
tctcgtgaagttgctaatctttgtggaattatggctgcagaaatgggcttaaacgcaaaa
gctgcaaaacgtgcaggtttattacatgatataggtaaagtaccagatactgaaagcgaa
ttaccacacgcattattaggaatgcaatgggcagagaaatatggtgaaaaaccagatgtt
tgtaatgctattggtgctcaccacgacgaaatagaaatgaagagtttaatttctccaatt
gtacaagtttgtgatgcaatatcaggagcaagaccaggtgcaagacgtcaagtgctagat
tcttatatacaacgtttaaaagatttagaagaaattgcttttggttttaacggagttcaa
aaagcatacgctatccaagctggtagagaattacgtgttatggtagaaagtgctaaagta
aatgatactaaagcagcagaattatcatttaatatttctcagaaaatacaaaatgatatg
acgtacccaggacaagttaaagttactgttattagggaaacaagagctgttaatgtagct
aagtaa
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