Tenacibaculum todarodis: LPB136_11205
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Entry
LPB136_11205 CDS
T04588
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
ten
Tenacibaculum todarodis
Pathway
ten03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ten00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LPB136_11205
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ten03019
]
LPB136_11205
Enzymes [BR:
ten01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LPB136_11205
Messenger RNA biogenesis [BR:
ten03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LPB136_11205
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
UvrD-helicase
ERCC3_RAD25_C
AAA_22
Shikimate_DH
Motif
Other DBs
NCBI-ProteinID:
APG66483
UniProt:
A0A1L3JN13
LinkDB
All DBs
Position
complement(2462921..2464222)
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AA seq
433 aa
AA seq
DB search
MTFKSLGLTDALLKAIEEKGYTTPSPIQEKAIPHILAGKDVLASAQTGTGKTAGFTLPVL
QYLSETKHPKYRPVRALVLTPTRELAAQILENVREYSTHLDIKSTVVFGGVKASGQIATL
RRGVDILVATPGRLLDLHSQKAVSFNRIDVLILDEADRMLDMGFARDLNKIMSYLPAKRQ
NLLFSATFSKEIKRLAEGILKNPVMVNAAPQNSTAEMVSQKAYLVDKGKKTQVVTNLIKD
GNWNQVLIFTRTKHGANKLTKKLIGAGISAAAIHGNKSQGARTKALKSFKENTIRVMVAT
DIAARGLDIPLLPHVINFELPNVPEDYVHRIGRTGRAGASGQAISLVCSEETEYQAEIEK
LLKKKLETEIIEGFEPTDTAGPKRAATQKKGSFNKKKKGVGASHRGGSGTKKKRPSDGNS
EGAGRNRSRNRRR
NT seq
1302 nt
NT seq
+upstream
nt +downstream
nt
atgacatttaaatctttaggattaactgacgctttattaaaagccattgaagaaaaagga
tatacaactccatcaccaatacaagaaaaagcaattccgcatattttagcaggtaaagat
gttttggcatctgcacaaaccggaacaggaaaaacagctggttttaccttacctgtttta
caatatttatcggaaactaaacatccaaaatacagaccagtacgtgctttggtattaact
ccaacaagggaattagctgctcaaatcttagaaaatgtaagagaatatagtacacattta
gacataaaatctaccgttgtttttggtggtgtaaaagcaagcggacaaatagcaacttta
agaagaggtgtagatattttagtagcaactcctggtagattattagatttacacagccaa
aaagccgtgtcttttaatcgtattgatgtgcttattttagatgaagctgacagaatgtta
gacatgggttttgctcgtgatttgaataaaataatgagttacttgcctgcaaaacgtcaa
aatttgttgttttcagctactttttcaaaagaaattaaaagacttgctgaagggatttta
aaaaatcctgttatggtaaatgcggcaccgcaaaattctaccgcagaaatggtttctcaa
aaagcctatttagttgataaaggcaaaaaaacacaagtagttaccaacttaattaaagat
ggaaattggaatcaggttttaatctttacaagaactaaacatggagctaataaattaaca
aaaaaattaattggagcaggtatttctgcagctgcaattcacggaaataaaagtcaaggt
gctagaacaaaagcgttaaagagttttaaagaaaataccataagagttatggtagcaacc
gatattgctgctcgtggattagacattccgttattaccacacgtaattaattttgagtta
ccaaatgtacccgaagattatgtacatagaattggtagaactggtagagctggagcaagc
ggacaagctatttctttagtttgtagcgaagaaactgaatatcaagcagaaatagaaaag
ctacttaagaaaaaactagaaaccgaaataattgaaggctttgaaccaacagatactgct
ggcccaaaacgtgctgctactcagaaaaaaggttctttcaacaaaaagaaaaaaggtgtt
ggcgcttctcatagaggcggttctggaacaaagaaaaaaagaccgtcagatggaaattct
gaaggagctggtagaaacagatctagaaatagacgtagataa
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