Tenacibaculum todarodis: LPB136_12620
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Entry
LPB136_12620 CDS
T04588
Name
(GenBank) RNA polymerase sigma-54 factor
KO
K03092
RNA polymerase sigma-54 factor
Organism
ten
Tenacibaculum todarodis
Pathway
ten02020
Two-component system
ten02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
ten00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
LPB136_12620
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
LPB136_12620
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ten03021
]
LPB136_12620
Transcription machinery [BR:
ten03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
LPB136_12620
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma54_CBD
Sigma54_DBD
Sigma54_AID
LacI
MarR
SPT2_N
Motif
Other DBs
NCBI-ProteinID:
APG66163
UniProt:
A0A1L3JM36
LinkDB
All DBs
Position
complement(2762096..2763556)
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AA seq
486 aa
AA seq
DB search
MLKQSLHYKLLQKLSPQQIQLMKLIQLPTQAFEERLKQEIEENPALDTGKEEPENFEDTL
ADQEFDDTGNEKIEAEDINIDEYLSDDEYPSYKTQANNYSADDEEKNVPYAAGTTFHQSL
LNQLNTFMIDEEERAIAEFLVGSIDDSGYIRREIIDLVDDLAFTQNIFTEEDKVEKVMCN
VVQRLDPIGVGARDLKECLIIQLKAKSATKYRDLAIDILENAFDHFVKKHYKKLQEKFNI
SEEELKDTITEIGKLNPKPGSSYAGNNKIAEQIVPDYSMRIVDGQLELTLNSRNAPELHV
SREYNNMLKGYQESKEKSKSQKDAVFFIKQKLDAAKWFIDAIKQRQQTLLVTMNCIMHHQ
YDYFLTGDERKLKPMILKDIADKINMDVSTVSRVANSKYVSTPYGTKLIKEFFSESMKND
QGEDVSTREIKKILETVVSEEDKRKPFTDEKLSKLLKEKGYPIARRTVAKYREQLDIPVA
RLRKEI
NT seq
1461 nt
NT seq
+upstream
nt +downstream
nt
atgctaaaacaaagtttacattataaactcttacaaaaattatctccacaacaaattcag
ttgatgaagctaattcaattacctacacaggcttttgaagagcgtttaaaacaagaaatt
gaagagaatcctgcgttagatacaggtaaagaagagccagaaaactttgaagacacatta
gcagatcaagaatttgacgatactggaaatgaaaaaatagaagctgaagatataaacatt
gatgaatatcttagcgatgatgaatatccaagttataaaacacaagcgaataattattcc
gcagatgatgaagaaaaaaacgttccttatgcagctggaactacttttcatcaatcttta
ttaaatcaattaaacaccttcatgattgatgaagaagaacgtgcaattgcagagttttta
gttggtagtattgatgatagcggttatatacgtagagaaattattgatttagtagatgat
ctagcttttacccaaaacatcttcactgaagaagataaagtggaaaaagtaatgtgtaat
gttgtacaaagattagatccaattggagttggcgcaagagatttaaaagaatgtttaatt
attcaattaaaagctaaatctgctacaaaatatagagatttagctattgacattcttgaa
aacgcgtttgatcattttgtaaagaaacattataaaaaactacaagaaaaatttaatatt
tctgaagaagaattgaaagatactatcacagaaatagggaaattaaatccaaaaccagga
agttcttacgcaggtaataataagattgcagagcaaatagttccagattattcaatgaga
attgttgacggacaattagagctaactttaaattctagaaacgctccagaattacatgtt
tctcgtgaatataacaacatgttaaaaggatatcaagagtcaaaagagaaaagtaaatct
caaaaagatgcggtattttttatcaagcaaaaattagatgctgcaaaatggtttattgac
gctattaaacaacgtcaacaaacacttttagttactatgaactgcataatgcaccatcaa
tacgattattttttaactggtgatgagcgcaagttaaaaccaatgatcttaaaagatatt
gcagataaaattaacatggatgtttctacagtttctcgtgtagcaaacagtaagtatgta
tctacgccttacggaacaaaattgattaaagaattcttctcagaatcgatgaaaaatgac
caaggggaagatgtatctacaagagaaataaagaaaattttagagactgttgtttctgaa
gaagataaacgcaagccttttacagatgaaaaattatctaaattactcaaagaaaaaggc
tacccaatcgctagaaggactgttgccaaatatcgtgagcaattagatattcccgttgca
agacttagaaaagaaatttaa
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